mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 170,487 | 0 | G | T | 64.7% | 44.1 / 93.5 | 68 | R237L (CGC→CTC) | fhuC | iron(III) hydroxamate ABC transporter ATP binding subunit |
| * | NC_000913 | 445,558 | 0 | A | C | 34.3% | 50.8 / 13.1 | 35 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 4,111,747 | 0 | G | T | 30.6% | 83.8 / 14.9 | 36 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 27.8% | 60.5 / 21.6 | 36 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.7% | 107.6 / 43.9 | 65 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 646,747 | 0 | T | G | 26.8% | 74.2 / 23.7 | 41 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 53 (0.790) | 10 (0.160) | 10/258 | 3.6 | 13.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 76 (1.210) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4552714 | 60 (0.960) | 6 (0.090) +GAA |
3/252 | 6.1 | 8.6% | coding (1079/1185 nt) | uxuA | D‑mannonate dehydratase |
| ? | NC_000913 | 4552715 = | 66 (0.980) | coding (1080/1185 nt) | uxuA | D‑mannonate dehydratase | |||||
| * | ? | NC_000913 | = 536006 | 35 (0.550) | 3 (0.050) +AAA |
3/256 | 6.1 | 7.5% | coding (297/777 nt) | hyi | hydroxypyruvate isomerase |
| ? | NC_000913 | 536007 = | 39 (0.580) | coding (298/777 nt) | hyi | hydroxypyruvate isomerase | |||||
| * | ? | NC_000913 | 4560257 = | 48 (0.720) | 3 (0.050) | 3/262 | 6.2 | 6.0% | coding (424/684 nt) | yjiH | Gate family protein YjiH |
| ? | NC_000913 | = 4560253 | 48 (0.750) | coding (428/684 nt) | yjiH | Gate family protein YjiH | |||||
| * | ? | NC_000913 | = 3296393 | 68 (1.010) | 3 (0.050) | 3/270 | 6.3 | 4.4% | coding (585/591 nt) | diaA | DnaA initiator‑associating factor for replication initiation |
| ? | NC_000913 | 3296397 = | 65 (0.990) | coding (589/591 nt) | diaA | DnaA initiator‑associating factor for replication initiation | |||||
| * | ? | NC_000913 | = 3641624 | 67 (1.000) | 3 (0.050) | 3/272 | 6.4 | 4.3% | coding (763/1470 nt) | dtpB | dipeptide/tripeptide:H(+) symporter DtpB |
| ? | NC_000913 | 3641628 = | 67 (1.010) | coding (767/1470 nt) | dtpB | dipeptide/tripeptide:H(+) symporter DtpB | |||||
| * | ? | NC_000913 | = 1978641 | 0 (0.000) | 3 (0.050) | 3/272 | 6.4 | 100% | noncoding (630/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1978645 = | NA (NA) | noncoding (626/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1050405 | NA (NA) | 3 (0.040) | 3/276 | 6.4 | 2.9% | noncoding (628/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1050409 = | 102 (1.520) | noncoding (632/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 258046 | 0 (0.000) | 3 (0.050) | 3/272 | 6.4 | 100% | noncoding (630/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 258050 = | NA (NA) | noncoding (626/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 19934 | 0 (0.000) | 3 (0.050) | 3/272 | 6.4 | 100% | noncoding (630/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 19938 = | NA (NA) | noncoding (626/768 nt) | IS1 | repeat region | |||||