mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 501,572 | 0 | A | C | 43.5% | 24.9 / 11.2 | 23 | V556G (GTG→GGG) | ybaL | putative transporter YbaL |
| * | NC_000913 | 501,564 | 0 | A | C | 33.3% | 32.1 / 15.7 | 24 | *559E (TAA→GAA) | ybaL | putative transporter YbaL |
| * | NC_000913 | 4,604,344 | 0 | C | T | 31.4% | 64.7 / 19.8 | 51 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 753,125 | 0 | T | A | 27.0% | 75.0 / 12.2 | 37 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 374,972 | 0 | T | C | 23.4% | 76.9 / 21.4 | 47 | intergenic (+91/‑487) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| * | NC_000913 | 374,966 | 0 | A | G | 21.3% | 88.0 / 21.2 | 47 | intergenic (+85/‑493) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 44 (1.050) | 5 (0.130) | 5/260 | 3.4 | 11.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 34 (0.870) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 555833 | 40 (0.960) | 4 (0.110) | 4/246 | 3.6 | 10.2% | coding (1223/1386 nt) | cysS | cysteine‑‑tRNA ligase |
| ? | NC_000913 | = 556784 | 35 (0.950) | coding (90/213 nt) | ybcJ | putative RNA‑binding protein YbcJ | |||||
| * | ? | NC_000913 | 899695 = | NA (NA) | 4 (0.110) | 3/250 | 4.1 | NA | intergenic (+50/+149) | rlmC/artJ | 23S rRNA m(5)U747 methyltransferase/L‑arginine ABC transporter periplasmic binding protein |
| ? | NC_000913 | 900784 = | NA (NA) | intergenic (‑209/+82) | artJ/artM | L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM | |||||
| * | ? | NC_000913 | 3588442 = | 34 (0.810) | 3 (0.080) | 3/260 | 4.2 | 7.9% | coding (739/1071 nt) | ugpC | sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit |
| ? | NC_000913 | 3589209 = | 38 (0.970) | coding (819/846 nt) | ugpE | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpE | |||||
| * | ? | NC_000913 | = 320947 | 53 (1.270) | 4 (0.100) | 3/264 | 4.2 | 7.5% | coding (721/855 nt) | rclR | DNA‑binding transcriptional activator RclR |
| ? | NC_000913 | = 321038 | 48 (1.210) | coding (812/855 nt) | rclR | DNA‑binding transcriptional activator RclR | |||||
| * | ? | NC_000913 | = 2230019 | 28 (0.670) | 3 (0.070) | 3/268 | 4.3 | 7.7% | coding (367/948 nt) | dusC | tRNA‑dihydrouridine(16) synthase |
| ? | NC_000913 | = 2230235 | 45 (1.120) | coding (151/948 nt) | dusC | tRNA‑dihydrouridine(16) synthase | |||||
| * | ? | NC_000913 | = 2392282 | 15 (0.360) | 3 (0.070) | 3/278 | 4.4 | 17.6% | coding (760/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M |
| ? | NC_000913 | 2392286 = | 13 (0.310) | coding (756/1530 nt) | nuoM | NADH:quinone oxidoreductase subunit M | |||||