mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 178,175 | C→A | Q96H (CAG→CAT) | btuF ← | vitamin B12 ABC transporter periplasmic binding protein |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 877,751 | C→A | P95P (CCG→CCT) | rimO ← | ribosomal protein S12 methylthiotransferase RimO |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,049,923 | C→A | L31I (CTC→ATC) | insA‑4 → | IS1 protein InsA |
| RA | 1,287,240 | G→T | intergenic (‑4/+4) | rttR ← / ← tyrV | small RNA RttR/tRNA‑Tyr |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,741,589 | C→A | G59G (GGC→GGA) | cfa → | cyclopropane fatty acyl phospholipid synthase |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,071,172 | C→A | pseudogene (387/426 nt) | yeeP → | CP4‑44 prophage; putative GTP‑binding protein |
| RA | 2,091,937 | G→A | V281I (GTT→ATT) | hisD → | histidinal/histidinol dehydrogenase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,274,149 | C→A | L596M (CTG→ATG) | yejA → | putative oligopeptide ABC transporter periplasmic binding protein |
| RA | 2,483,187 | C→A | T51T (ACG→ACT) | emrK ← | tripartite efflux pump membrane fusion protein EmrK |
| RA | 2,522,486 | G→T | intergenic (‑9/+243) | xapR ← / ← xapB | DNA‑binding transcriptional activator XapR/xanthosine:H(+) symporter XapB |
| RA | 2,946,395 | C→A | A262S (GCT→TCT) | mltA ← | membrane‑bound lytic murein transglycosylase A |
| RA | 3,023,896 | G→T | G861C (GGC→TGC) | xdhD → | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
| RA | 3,091,169 | G→T | L12L (CTG→CTT) | rsmE → | 16S rRNA m(3)U1498 methyltransferase |
| RA | 3,340,494 | C→A | L74I (CTC→ATC) | yrbG → | putative transport protein YrbG |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,689,231 | T→G | D344A (GAT→GCT) | bcsZ ← | endo‑1,4‑D‑glucanase |
| RA | 3,750,633 | C→A | A183D (GCC→GAC) | sgbE → | L‑ribulose‑5‑phosphate 4‑epimerase SgbE |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,824,561 | G→A | R16Q (CGG→CAG) | trmH → | tRNA (Gm18) 2'‑O‑methyltransferase |
| RA | 4,028,608 | C→A | W55C (TGG→TGT) | fadA ← | 3‑ketoacyl‑CoA thiolase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,572,231 | G→T | intergenic (+316/‑183) | yjiS → / → yjiT | DUF1127 domain‑containing protein YjiS/putative uncharacterized protein YjiT |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104091 | 1122 | 9 [8] | [8] 10 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423791–3424233 | 3424551–3424242 | 10–761 | 9 [7] | [8] 9 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 20 (0.510) | 11/262 | 1.9 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 33 (0.790) | 12 (0.330) | 12/246 | 1.6 | 26.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 39 (1.060) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 33 (0.790) | 9 (0.240) | 7/246 | 2.6 | 20.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 39 (1.060) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 66 (1.630) | 48/270 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 73 (1.750) | 58 (1.400) | 40/276 | 0.1 | 61.6% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 61 (1.460) | 40/278 | 0.1 | 95.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||