mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 45.5% | 13.5 / 25.1 | 33 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,649,290 | 1 | . | G | 22.2% | 35.6 / 13.9 | 18 | intergenic (+249/‑92) | ydfC/dicF | Qin prophage; uncharacterized protein YdfC/Qin prophage; small regulatory RNA DicF |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 359236 | 17 (0.480) | 4 (0.130) | 4/248 | 3.2 | 19.0% | coding (438/660 nt) | cynT | carbonic anhydrase 1 |
| ? | NC_000913 | = 359364 | 19 (0.600) | coding (566/660 nt) | cynT | carbonic anhydrase 1 | |||||
| * | ? | NC_000913 | 15387 = | NA (NA) | 4 (0.140) | 3/226 | 3.3 | 26.7% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 16732 = | 11 (0.380) | intergenic (+175/+19) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| * | ? | NC_000913 | 377321 = | NA (NA) | 9 (0.250) | 4/276 | 3.5 | NA | intergenic (+10/+214) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| ? | NC_000913 | = 2304450 | NA (NA) | noncoding (2/34 nt) | other | REP161a | |||||
| * | ? | NC_000913 | 762116 = | 21 (0.590) | 3 (0.090) | 3/250 | 3.6 | 12.0% | coding (595/1218 nt) | sucB | dihydrolipoyltranssuccinylase |
| ? | NC_000913 | 762340 = | 25 (0.780) | coding (819/1218 nt) | sucB | dihydrolipoyltranssuccinylase | |||||
| * | ? | NC_000913 | = 3045997 | 32 (0.900) | 3 (0.090) | 3/258 | 3.7 | 9.6% | intergenic (‑96/+171) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | = 3046078 | 27 (0.820) | intergenic (‑177/+90) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | = 1390182 | 47 (1.320) | 3 (0.090) | 3/262 | 3.7 | 6.6% | coding (417/729 nt) | mpaA | murein tripeptide amidase A |
| ? | NC_000913 | = 1390244 | 41 (1.220) | coding (355/729 nt) | mpaA | murein tripeptide amidase A | |||||
| * | ? | NC_000913 | = 736916 | 50 (1.410) | 3 (0.080) | 3/276 | 3.9 | 5.6% | pseudogene (17/1062 nt) | ybfL | putative transposase YbfL |
| ? | NC_000913 | 736920 = | 51 (1.440) | pseudogene (21/1062 nt) | ybfL | putative transposase YbfL | |||||