mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.8% | 55.2 / 28.8 | 45 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,550,663 | 0 | A | C | 37.5% | 36.4 / 16.3 | 32 | N68T (AAC→ACC) | fdnH | formate dehydrogenase N subunit beta |
| * | NC_000913 | 753,125 | 0 | T | A | 34.8% | 74.8 / 22.7 | 46 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,404,218 | 0 | T | G | 32.6% | 70.1 / 15.0 | 43 | G245G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 30.9% | 77.6 / 11.7 | 42 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 3,404,215 | 0 | T | G | 30.2% | 70.4 / 16.9 | 43 | G244G (GGT→GGG) | yhdH | acrylyl‑CoA reductase |
| * | NC_000913 | 753,114 | 0 | G | T | 29.4% | 127.7 / 13.4 | 51 | intergenic (‑319/+71) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 29,496 | 0 | T | A | 27.5% | 84.9 / 17.4 | 40 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 4,101,514 | 0 | G | T | 25.6% | 102.4 / 11.2 | 39 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 1,577,123 | 0 | A | C | 24.6% | 124.9 / 13.1 | 61 | V166G (GTA→GGA) | yddB | putative TonB‑dependent receptor |
| * | NC_000913 | 2,326,450 | 0 | T | G | 24.3% | 71.1 / 16.2 | 37 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 753,105 | 0 | A | T | 23.2% | 143.5 / 11.1 | 56 | intergenic (‑310/+80) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 599,576 | 0 | T | G | 22.2% | 76.0 / 10.5 | 36 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 646,747 | 0 | T | G | 20.4% | 114.4 / 13.4 | 49 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978494 | 0 (0.000) | 6 (0.110) | 4/276 | 5.4 | 100% | intergenic (‑297/+24) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4597304 = | 41 (0.730) | 3 (0.060) | 3/260 | 5.7 | 7.1% | coding (2138/2292 nt) | opgB | phosphoglycerol transferase I |
| ? | NC_000913 | = 4597300 | 40 (0.760) | coding (2142/2292 nt) | opgB | phosphoglycerol transferase I | |||||