mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 40.3% | 63.6 / 43.2 | 62 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 40.0% | 39.8 / 19.7 | 25 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,429,984 | 0 | T | G | 35.7% | 59.3 / 18.2 | 42 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 3,926,366 | 0 | A | C | 29.5% | 138.6 / 24.9 | 79 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 2,001,918 | 0 | A | C | 28.6% | 58.4 / 10.5 | 35 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 753,125 | 0 | T | A | 24.5% | 108.1 / 15.6 | 49 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,640,981 | 0 | C | T | 22.2% | 84.5 / 10.1 | 36 | F40F (TTC→TTT) | dtpB | dipeptide/tripeptide:H(+) symporter DtpB |
| * | NC_000913 | 2,548,050 | 0 | T | G | 22.0% | 117.7 / 13.1 | 59 | F460V (TTT→GTT) | murP | N‑acetylmuramic acid‑specific PTS enzyme IICB component/anhydro‑N‑acetylmuramic acid transporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.2% | 186.2 / 37.6 | 79 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 74 (1.060) | 13 (0.210) | 12/244 | 3.2 | 16.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 64 (1.040) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4542682 = | 62 (0.890) | 12 (0.180) | 10/258 | 3.9 | 18.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 47 (0.720) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 53 (0.760) | 7 (0.110) | 6/258 | 5.2 | 12.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 47 (0.720) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 2063021 = | 75 (1.080) | 3 (0.040) | 3/270 | 6.8 | 3.7% | coding (303/933 nt) | ldtA | L,D‑transpeptidase ErfK |
| ? | NC_000913 | 2063030 = | 85 (1.250) | coding (294/933 nt) | ldtA | L,D‑transpeptidase ErfK | |||||