mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 26.9% | 456.7 / 187.3 | 290 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 22.5% | 659.1 / 165.8 | 287 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 3,891,502 | 0 | C | G | 21.1% | 550.6 / 141.3 | 229 | intergenic (+19/‑113) | tnaB/mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| * | NC_000913_3_bme_pgi | 1,311,831 | 0 | C | T | 20.9% | 451.9 / 115.4 | 221 | intergenic (+23/+17) | tonB/yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| * | NC_000913_3_bme_pgi | 1,311,830 | 0 | A | G | 20.7% | 442.6 / 117.0 | 224 | intergenic (+22/+18) | tonB/yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| * | NC_000913_3_bme_pgi | 4,177,171 | 0 | T | A | 20.5% | 504.0 / 127.1 | 220 | intergenic (+43/‑187) | tufB/secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 20.4% | 757.1 / 153.2 | 270 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 1737 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1870243 = | 268 (1.210) | 31 (0.160) | 20/176 | 17.7 | 11.5% | intergenic (+5/‑142) | yeaH/yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase |
| ? | NC_000913_3_bme_pgi | 1870272 = | 239 (1.200) | intergenic (+34/‑113) | yeaH/yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase | |||||
| * | ? | NC_000913_3_bme_pgi | = 4326285 | NA (NA) | 29 (0.220) +40 bp |
7/116 | 18.7 | NA | noncoding (483/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 4326185 | 88 (0.400) | 29 (0.220) +40 bp |
7/116 | 18.7 | 35.9% | noncoding (383/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 4325985 | 132 (0.600) | 29 (0.220) +40 bp |
7/116 | 18.7 | 27.2% | noncoding (183/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 4325885 | 218 (0.980) | 29 (0.220) +40 bp |
7/116 | 18.7 | 18.5% | noncoding (83/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | 3234690 = | 211 (0.950) | 29 (0.220) +40 bp |
7/116 | 18.7 | 19.0% | noncoding (53/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 2347280 | 184 (0.830) | 29 (0.220) +40 bp |
7/116 | 18.7 | 21.1% | noncoding (121/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 2347193 | 221 (1.000) | 29 (0.220) +40 bp |
7/116 | 18.7 | 18.2% | noncoding (34/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | 2340361 = | NA (NA) | 29 (0.220) +40 bp |
7/116 | 18.7 | NA | noncoding (49/82 nt) | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 2316916 | 199 (0.900) | 29 (0.220) +40 bp |
7/116 | 18.7 | 19.9% | noncoding (83/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||