mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 30.1% | 202.4 / 110.5 | 113 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 28.0% | 178.7 / 105.7 | 118 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 26.2% | 200.0 / 71.3 | 108 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 2,383,959 | 0 | A | T | 26.0% | 154.7 / 59.9 | 77 | intergenic (+35/+36) | elaD/yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| * | NC_000913_3_bme_pgi | 2,383,956 | 0 | A | T | 25.6% | 160.4 / 57.3 | 78 | intergenic (+32/+39) | elaD/yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 23.7% | 241.6 / 77.9 | 131 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 940,754 | 0 | G | A | 21.0% | 207.5 / 49.3 | 100 | intergenic (+34/‑205) | serS/dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913_3_bme_pgi | 111,013 | 0 | G | A | 20.6% | 200.9 / 46.9 | 97 | intergenic (+29/‑31) | secA/mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| * | NC_000913_3_bme_pgi | 111,016 | 0 | T | C | 20.6% | 203.2 / 46.9 | 97 | intergenic (+32/‑28) | secA/mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| * | NC_000913_3_bme_pgi | 940,751 | 0 | T | C | 20.2% | 219.4 / 44.6 | 100 | intergenic (+31/‑208) | serS/dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| Marginal new junction evidence (lowest skew 10 of 552 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 4233518 = | 1287 (14.520) | 73 (0.940) | 46/224 | 0.9 | 6.2% | intergenic (‑285/‑2389) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_bme_pgi | 4233534 = | 1078 (13.910) | intergenic (‑301/‑2373) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 4227549 | 1097 (12.370) | 88 (1.050) | 48/242 | 1.1 | 7.6% | intergenic (+38/‑182) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_bme_pgi | = 4227560 | 1088 (12.990) | intergenic (+49/‑171) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_bme_pgi | = 4229386 | 1264 (14.260) | 75 (0.900) | 42/242 | 1.6 | 5.9% | noncoding (11/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4229405 | NA (NA) | noncoding (30/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 4235432 | 1186 (13.380) | 71 (0.850) | 33/242 | 2.7 | 6.0% | noncoding (11/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4235448 | NA (NA) | noncoding (27/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | 4234621 = | 1300 (14.660) | 67 (0.800) | 33/242 | 2.7 | 5.4% | intergenic (‑1388/‑1286) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_bme_pgi | 4234638 = | 1114 (13.300) | intergenic (‑1405/‑1269) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_bme_pgi | 4227543 = | 1097 (12.370) | 56 (0.670) | 33/242 | 2.7 | 5.0% | intergenic (+32/‑188) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_bme_pgi | 4227568 = | 1088 (12.990) | intergenic (+57/‑163) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_bme_pgi | 4235375 = | NA (NA) | 69 (0.780) | 32/256 | 3.2 | NA | intergenic (‑2142/‑532) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_bme_pgi | 4235397 = | NA (NA) | intergenic (‑2164/‑510) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 4234159 | 1228 (13.850) | 65 (0.760) | 30/246 | 3.3 | 5.3% | intergenic (‑926/‑1748) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_bme_pgi | = 4234185 | 1150 (13.500) | intergenic (‑952/‑1722) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_bme_pgi | 4229380 = | NA (NA) | 39 (0.470) | 27/242 | 3.8 | NA | noncoding (5/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | 4229413 = | NA (NA) | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | 4227805 = | 1251 (14.110) | 54 (0.620) | 28/252 | 3.8 | 4.1% | coding (75/1632 nt) | yjbB | putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_bme_pgi | 4227828 = | 1273 (14.590) | coding (98/1632 nt) | yjbB | putative Na+/Pi‑cotransporter | |||||