mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 526,792 | 0 | A | C | 43.1% | 35.3 / 81.9 | 72 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,796 | 0 | C | G | 42.6% | 51.3 / 93.2 | 68 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,800 | 0 | A | G | 39.4% | 61.6 / 63.9 | 66 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 3,288,033 | 0 | T | G | 25.8% | 95.7 / 44.5 | 62 | intergenic (+23/‑57) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| * | NC_000913_3_hsa_pgi | 3,288,032 | 0 | C | A | 24.2% | 105.8 / 38.6 | 62 | intergenic (+22/‑58) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| * | NC_000913_3_hsa_pgi | 4,296,088 | 0 | C | T | 22.8% | 165.4 / 43.3 | 92 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 149 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | = 4235606 | 936 (13.930) | 47 (0.750) | 34/262 | 1.0 | 5.0% | intergenic (‑2373/‑328) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_hsa_pgi | = 4235611 | 920 (14.640) | intergenic (‑2378/‑323) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4236253 | 1159 (17.250) | 50 (0.800) | 31/260 | 1.2 | 4.3% | intergenic (+77/‑37) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_hsa_pgi | = 4236257 | 1167 (18.720) | intergenic (+81/‑33) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_hsa_pgi | 4240769 = | 1082 (16.110) | 31 (0.500) | 21/260 | 2.6 | 3.1% | intergenic (+6/+38) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter |
| ? | NC_000913_3_hsa_pgi | 4240797 = | 949 (15.220) | intergenic (+34/+10) | psiE/xylE | phosphate starvation inducible protein/D‑xylose transporter | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4219847 | 705 (10.500) | 25 (0.410) | 19/256 | 3.0 | 3.6% | coding (1252/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913_3_hsa_pgi | = 4219854 | 687 (11.190) | coding (1259/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913_3_hsa_pgi | 4236244 = | 1087 (16.180) | 30 (0.480) | 17/260 | 3.5 | 2.7% | intergenic (+68/‑46) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| ? | NC_000913_3_hsa_pgi | 4236268 = | 1167 (18.720) | intergenic (+92/‑22) | yjbE/yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein | |||||
| * | ? | NC_000913_3_hsa_pgi | 4240185 = | NA (NA) | 28 (0.440) | 17/266 | 3.6 | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_hsa_pgi | 4240218 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4229386 | 1134 (16.880) | 28 (0.440) | 17/266 | 3.6 | 2.5% | noncoding (11/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_pgi | = 4229405 | NA (NA) | noncoding (30/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4229386 | 1137 (16.930) | 25 (0.390) | 16/266 | 3.8 | 4.1% | noncoding (11/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_pgi | 4614643 = | 91 (1.430) | noncoding (359/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_hsa_pgi | 2894838 = | NA (NA) | 25 (0.390) | 16/266 | 3.8 | 2.3% | noncoding (31/67 nt) | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_hsa_pgi | = 4229379 | 1061 (16.630) | noncoding (4/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_hsa_pgi | 551354 = | NA (NA) | 25 (0.390) | 16/266 | 3.8 | 2.3% | noncoding (1/157 nt) | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_hsa_pgi | = 4229379 | 1061 (16.630) | noncoding (4/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||