mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 27.5% | 49.6 / 20.2 | 40 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 1,868,865 | 1 | . | G | 20.0% | 122.3 / 39.0 | 45 | intergenic (+23/‑90) | yeaG/yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1287077 = | 41 (1.050) | 7 (0.190) | 7/272 | 3.8 | 15.5% | noncoding (160/171 nt) | rttR | rtT sRNA, processed from tyrT transcript |
| ? | NC_000913_3_hsa_tpiA | 1287111 = | 37 (0.980) | noncoding (126/171 nt) coding (66/90 nt) |
rttR tpr |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
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| * | ? | NC_000913_3_hsa_tpiA | 1286899 = | 57 (1.450) | 7 (0.190) | 7/272 | 3.8 | 13.2% | intergenic (+373/+167) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| ? | NC_000913_3_hsa_tpiA | 1287111 = | 37 (0.980) | noncoding (126/171 nt) coding (66/90 nt) |
rttR tpr |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
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| * | ? | NC_000913_3_hsa_tpiA | 1286721 = | 43 (1.100) | 7 (0.190) | 7/272 | 3.8 | 15.1% | intergenic (+195/+345) | narI/rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| ? | NC_000913_3_hsa_tpiA | 1287111 = | 37 (0.980) | noncoding (126/171 nt) coding (66/90 nt) |
rttR tpr |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
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| * | ? | NC_000913_3_hsa_tpiA | = 2700568 | 37 (0.940) | 4 (0.120) | 4/244 | 4.6 | 11.4% | noncoding (49/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913_3_hsa_tpiA | = 2700581 | 30 (0.880) | noncoding (62/77 nt) | ohsC | sRNA antisense regulator of shoB toxin | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2296690 | 38 (0.970) | 4 (0.110) | 4/272 | 5.0 | 9.8% | coding (335/663 nt) | ccmB | heme export ABC transporter permease |
| ? | NC_000913_3_hsa_tpiA | = 2296727 | 37 (0.980) | coding (298/663 nt) | ccmB | heme export ABC transporter permease | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4638995 = | 30 (0.760) | 3 (0.080) | 3/270 | 5.5 | 9.6% | coding (836/1353 nt) | creD | inner membrane protein |
| ? | NC_000913_3_hsa_tpiA | 4639013 = | 28 (0.750) | coding (854/1353 nt) | creD | inner membrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 28 (0.710) | 3 (0.080) | 3/264 | 5.5 | 8.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 38 (1.040) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2755411 = | 28 (0.710) | 3 (0.080) | 3/270 | 5.5 | 8.6% | intergenic (+33/‑748) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| ? | NC_000913_3_hsa_tpiA | 2755435 = | 37 (0.990) | intergenic (+57/‑724) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2544028 = | 54 (1.380) | 4 (0.110) | 3/270 | 5.5 | 7.2% | coding (596/792 nt) | ucpA | furfural resistance protein, putative short‑chain oxidoreductase |
| ? | NC_000913_3_hsa_tpiA | 2544050 = | 52 (1.390) | coding (574/792 nt) | ucpA | furfural resistance protein, putative short‑chain oxidoreductase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2110440 = | 25 (0.640) | 3 (0.080) | 3/274 | 5.6 | 9.2% | coding (580/882 nt) | rfbA | glucose‑1‑phosphate thymidylyltransferase |
| ? | NC_000913_3_hsa_tpiA | 2110468 = | 35 (0.920) | coding (552/882 nt) | rfbA | glucose‑1‑phosphate thymidylyltransferase | |||||