mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 31.2% | 258.1 / 154.9 | 186 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 965 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 126 (0.940) | 21 (0.180) | 21/234 | 10.4 | 16.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 97 (0.820) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3328172 = | 142 (1.060) | 20 (0.160) | 19/246 | 11.8 | 12.8% | intergenic (+89/+67) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| ? | NC_000913_3_hsa_tpiA | 3328195 = | 140 (1.130) | intergenic (+112/+44) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1552101 = | NA (NA) | 20 (0.160) | 17/242 | 12.5 | NA | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 1552249 = | NA (NA) | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1552071 = | NA (NA) | 20 (0.160) | 17/242 | 12.5 | NA | noncoding (1/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | 1552101 = | NA (NA) | noncoding (31/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 151518 | 144 (1.080) | 19 (0.150) | 17/246 | 12.7 | 12.5% | coding (82/597 nt) | yadK | putative fimbrial‑like adhesin protein |
| ? | NC_000913_3_hsa_tpiA | = 151522 | 133 (1.080) | coding (78/597 nt) | yadK | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3895233 | 130 (0.970) | 17 (0.140) | 16/242 | 12.9 | 12.5% | intergenic (+15/+39) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913_3_hsa_tpiA | = 3895244 | 120 (0.990) | intergenic (+26/+28) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3895222 = | 139 (1.040) | 17 (0.140) | 16/242 | 12.9 | 12.2% | intergenic (+4/+50) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913_3_hsa_tpiA | 3895257 = | 119 (0.980) | intergenic (+39/+15) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2035297 | 122 (0.910) | 18 (0.150) | 16/242 | 12.9 | 13.9% | intergenic (+54/‑538) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone |
| ? | NC_000913_3_hsa_tpiA | = 2035305 | 112 (0.920) | intergenic (+62/‑530) | yedS/hchA | pseudogene, outer membrane protein homology; putative outer membrane protein/glyoxalase III and Hsp31 molecular chaperone | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4213150 = | 118 (0.880) | 17 (0.140) | 16/244 | 13.0 | 15.0% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913_3_hsa_tpiA | 4213181 = | 85 (0.690) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3386191 = | 151 (1.130) | 19 (0.150) | 16/244 | 13.0 | 12.1% | intergenic (‑62/+30) | yhcO/aaeB | putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component |
| ? | NC_000913_3_hsa_tpiA | 3386218 = | 137 (1.120) | intergenic (‑89/+3) | yhcO/aaeB | putative barnase inhibitor/p‑hydroxybenzoic acid efflux system component | |||||