mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.2% | 37.1 / 136.0 | 116 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,270,082 | 0 | A | C | 40.7% | 13.5 / 17.0 | 27 | intergenic (+480/+134) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 4,037,225 | 0 | A | C | 40.0% | 7.3 / 12.0 | 20 | intergenic (+8/‑35) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913 | 4,037,226 | 0 | C | G | 40.0% | 7.1 / 20.7 | 20 | intergenic (+9/‑34) | ileT/alaT | tRNA‑Ile/tRNA‑Ala |
| * | NC_000913 | 3,270,081 | 0 | G | T | 36.0% | 15.5 / 10.4 | 26 | intergenic (+479/+135) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 3,270,083 | 0 | A | G | 36.0% | 17.5 / 19.9 | 27 | intergenic (+481/+133) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 3,270,080 | 0 | C | T | 32.0% | 24.1 / 15.8 | 26 | intergenic (+478/+136) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 2,718,298 | 0 | A | C | 25.6% | 94.5 / 15.2 | 83 | G77G (GGT→GGG) | yfiF | putative methyltransferase |
| * | NC_000913 | 3,269,969 | 0 | A | C | 24.6% | 71.5 / 15.0 | 64 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 3,941,892 | 0 | T | A | 24.1% | 36.0 / 12.3 | 30 | noncoding (85/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 3,941,891 | 0 | T | A | 23.3% | 36.1 / 10.6 | 30 | noncoding (84/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| Marginal new junction evidence (lowest skew 10 of 331 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4171607 | 91 (0.800) | 26 (0.240) | 12/284 | 8.9 | 22.9% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3946688 | 140 (1.230) | 26 (0.240) | 12/284 | 8.9 | 16.2% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 26 (0.240) | 12/284 | 8.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 947028 = | 162 (1.420) | 13 (0.130) | 11/268 | 8.9 | 8.0% | intergenic (+9/‑201) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter |
| ? | NC_000913 | 947064 = | 151 (1.460) | intergenic (+45/‑165) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter | |||||
| * | ? | NC_000913 | = 228744 | 94 (0.820) | 26 (0.240) | 12/284 | 8.9 | 22.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3946053 | 9 (0.080) | 25 (0.230) | 12/288 | 9.0 | 74.1% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 25 (0.230) | 12/288 | 9.0 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 4366839 = | 184 (1.610) | 12 (0.120) | 10/266 | 9.2 | 7.1% | intergenic (‑66/+52) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| ? | NC_000913 | 4366871 = | 151 (1.470) | intergenic (‑98/+20) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase | |||||
| * | ? | NC_000913 | = 2470479 | 179 (1.570) | 13 (0.120) | 11/278 | 9.2 | 7.3% | intergenic (+17/‑336) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| ? | NC_000913 | = 2470483 | 160 (1.490) | intergenic (+21/‑332) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1909042 = | 134 (1.170) | 11 (0.100) | 11/284 | 9.3 | 8.1% | coding (118/240 nt) | yobH | uncharacterized protein |
| ? | NC_000913 | 1909080 = | 122 (1.120) | coding (156/240 nt) | yobH | uncharacterized protein | |||||