mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,159,000 | 0 | T | G | 47.2% | ‑6.1 / 178.9 | 106 | C199G (TGT→GGT) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| * | NC_000913_3_pae_tpiA | 3,762,200 | 0 | A | G | 33.1% | 229.6 / 142.2 | 154 | A6A (GCA→GCG) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_tpiA | 3,762,212 | 0 | C | T | 31.2% | 233.3 / 121.2 | 146 | G10G (GGC→GGT) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 23.3% | 190.1 / 59.0 | 103 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 581 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 4168289 | 67 (0.720) | 12 (0.270) +66 bp |
11/118 | 4.0 | 28.9% | noncoding (2/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913_3_pae_tpiA | = 4209669 | 58 (0.620) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_pae_tpiA | 2729443 = | 36 (0.390) | 12 (0.270) +66 bp |
11/118 | 4.0 | 35.1% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_pae_tpiA | = 4209669 | 58 (0.620) | intergenic (+65/‑21) | rrsE/gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4168257 | 79 (0.850) | 25 (0.290) | 23/230 | 4.9 | 28.0% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913_3_pae_tpiA | = 4168279 | 56 (0.650) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_pae_tpiA | 2729443 = | 36 (0.390) | 25 (0.290) | 23/230 | 4.9 | 32.6% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_pae_tpiA | = 4168247 | 70 (0.820) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_pae_tpiA | 496998 = | NA (NA) | 22 (0.260) | 19/224 | 5.8 | NA | intergenic (+4/‑177) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| ? | NC_000913_3_pae_tpiA | 497030 = | NA (NA) | intergenic (+36/‑145) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3427055 | NA (NA) | 22 (0.240) | 21/250 | 6.0 | NA | intergenic (‑22/+21) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427078 | NA (NA) | noncoding (75/77 nt) | ileU | tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 225455 = | 12 (0.130) | 22 (0.240) | 21/250 | 6.0 | 64.7% | noncoding (75/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | = 3427055 | NA (NA) | intergenic (‑22/+21) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3732127 | 153 (1.640) | 22 (0.240) | 20/248 | 6.2 | 12.7% | intergenic (+4/‑74) | xylF/xylG | D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase |
| ? | NC_000913_3_pae_tpiA | = 3732154 | 152 (1.650) | intergenic (+31/‑47) | xylF/xylG | D‑xylose transporter subunit/D‑xylose ABC transporter dual domain ATPase | |||||
| * | ? | NC_000913_3_pae_tpiA | 225478 = | 21 (0.230) | 21 (0.230) | 20/250 | 6.3 | 50.0% | intergenic (+21/‑22) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913_3_pae_tpiA | = 3427078 | NA (NA) | noncoding (75/77 nt) | ileU | tRNA‑Ile | |||||
| * | ? | NC_000913_3_pae_tpiA | 225455 = | 12 (0.130) | 21 (0.230) | 20/250 | 6.3 | 56.0% | noncoding (75/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_pae_tpiA | 225478 = | 21 (0.230) | intergenic (+21/‑22) | ileV/alaV | tRNA‑Ile/tRNA‑Ala | |||||