mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 20.8% | 178.2 / 40.7 | 98 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 38 (0.580) | 17 (0.280) | 15/264 | 4.3 | 25.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 65 (1.060) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 69 (1.050) | 10 (0.170) | 10/250 | 5.6 | 13.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 63 (1.080) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 68 (1.030) | 7 (0.120) | 7/250 | 6.9 | 10.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 64 (1.100) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 39 (0.590) | 7 (0.110) | 6/264 | 7.8 | 12.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 65 (1.060) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 349605 = | NA (NA) | 5 (0.080) | 5/268 | 8.5 | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_pae_tpiA | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 3802387 = | 63 (0.960) | 3 (0.060) | 3/230 | 8.8 | 5.7% | coding (672/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase |
| ? | NC_000913_3_pae_tpiA | 3802413 = | 48 (0.900) | coding (646/1020 nt) | waaO | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||
| * | ? | NC_000913_3_pae_tpiA | 4385264 = | 58 (0.880) | 4 (0.070) | 4/260 | 8.9 | 6.5% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 4385291 = | 61 (1.010) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3140200 | 75 (1.140) | 4 (0.070) | 4/262 | 9.0 | 5.5% | coding (119/342 nt) | hybF | protein involved with the maturation of hydrogenases 1 and 2 |
| ? | NC_000913_3_pae_tpiA | = 3140206 | 67 (1.100) | coding (113/342 nt) | hybF | protein involved with the maturation of hydrogenases 1 and 2 | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4549702 | NA (NA) | 4 (0.060) | 4/268 | 9.1 | NA | noncoding (4/36 nt) | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 4549734 | NA (NA) | noncoding (36/36 nt) | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP345 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 2476567 | 65 (0.990) | 4 (0.060) | 4/266 | 9.1 | 6.1% | intergenic (+57/‑17) | torI/pawZ | response regulator inhibitor for tor operon/tRNA‑OTHER |
| ? | NC_000913_3_pae_tpiA | = 2476585 | 62 (1.000) | pseudogene (2/15 nt) | pawZ | tRNA‑OTHER | |||||