mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 25.9% | 42.1 / 11.0 | 28 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4137814 = | 65 (2.620) | 5 (0.220) | 4/262 | 2.6 | 8.1% | intergenic (‑241/+34) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913_3_pae_tpiA | 4137841 = | 53 (2.310) | intergenic (‑268/+7) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913_3_pae_tpiA | 3950444 = | 18 (0.720) | 4 (0.170) | 4/270 | 2.7 | 17.3% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 3950470 = | 21 (0.890) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3045993 | 29 (1.170) | 4 (0.170) | 4/274 | 2.8 | 12.9% | intergenic (‑92/+175) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_pae_tpiA | = 3046006 | 26 (1.090) | intergenic (‑105/+162) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||
| * | ? | NC_000913_3_pae_tpiA | 3437896 = | 28 (1.130) | 3 (0.130) | 3/260 | 3.0 | 9.9% | intergenic (+2/‑128) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| ? | NC_000913_3_pae_tpiA | 3437924 = | 29 (1.280) | intergenic (+30/‑100) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance | |||||
| * | ? | NC_000913_3_pae_tpiA | 496998 = | NA (NA) | 3 (0.130) | 3/258 | 3.0 | NA | intergenic (+4/‑177) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| ? | NC_000913_3_pae_tpiA | 497030 = | NA (NA) | intergenic (+36/‑145) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4162755 | 91 (3.660) | 3 (0.130) | 3/270 | 3.1 | 3.4% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase |
| ? | NC_000913_3_pae_tpiA | = 4162765 | 85 (3.600) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase, SAM‑dependent; tmRNA m(5)U341 methyltransferase | |||||
| * | ? | NC_000913_3_pae_tpiA | 4122239 = | 76 (3.060) | 3 (0.130) | 3/268 | 3.1 | 4.1% | intergenic (‑36/+57) | hslV/ftsN | peptidase component of the HslUV protease/essential cell division protein |
| ? | NC_000913_3_pae_tpiA | 4122259 = | 67 (2.860) | intergenic (‑56/+37) | hslV/ftsN | peptidase component of the HslUV protease/essential cell division protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 2530197 = | 29 (1.170) | 3 (0.130) | 3/268 | 3.1 | 9.2% | intergenic (‑21/+50) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer |
| ? | NC_000913_3_pae_tpiA | 2530218 = | 32 (1.370) | intergenic (‑42/+29) | ligA/zipA | DNA ligase, NAD(+)‑dependent/FtsZ stabilizer | |||||
| * | ? | NC_000913_3_pae_tpiA | = 349666 | 30 (1.210) | 3 (0.130) | 3/270 | 3.1 | 9.6% | noncoding (62/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_pae_tpiA | = 349683 | 28 (1.190) | noncoding (79/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | 4141122 = | 84 (3.380) | 3 (0.120) | 3/276 | 3.2 | 3.4% | coding (1016/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components |
| ? | NC_000913_3_pae_tpiA | 4141145 = | 88 (3.650) | coding (993/2502 nt) | frwA | putative PTS enzyme: Hpr, enzyme I and II components | |||||