Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,737,118 IS1 (+) +8 bp intergenic (+235/‑29) bamD → / → raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1978503 =NA (NA)33 (0.950) 26/160 0.4 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 2737118 = 0 (0.000)intergenic (+235/‑36) bamD/raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor
* ? NC_000913 = 1979270NA (NA)27 (0.780) 20/160 0.9 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 2737125 0 (0.000)intergenic (+242/‑29) bamD/raiA outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor

CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAG  >  NC_000913/1979193‑1979340
                                                                             |                                                                      
cAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCa                                                                      >  2:427002/1‑80 (MQ=32)
         gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGtat                                                             <  2:426966/80‑1 (MQ=255)
            aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGt                                                         <  1:426967/81‑1 (MQ=255)
                        ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACttttgtt                                             >  1:426997/1‑81 (MQ=255)
                          aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACttttgtttt                                           >  2:427008/1‑81 (MQ=255)
                               cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                      >  2:427004/1‑81 (MQ=255)
                                tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                      >  2:427000/1‑80 (MQ=255)
                                  aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGgtgt                                     <  1:426968/79‑1 (MQ=255)
                                      acacCATCATACAATAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                               <  1:426969/81‑1 (MQ=255)
                                       cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTACAAGTCATACTTTTGTTTTGGGTGTATTTCaa                              >  2:426999/1‑81 (MQ=255)
                                               tACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaa                      <  2:426970/81‑1 (MQ=255)
                                                 cacTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                     <  2:426971/80‑1 (MQ=255)
                                                  acTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                   <  1:426972/81‑1 (MQ=255)
                                                      aaTCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                <  2:426973/80‑1 (MQ=255)
                                                       aTCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt              <  1:426974/81‑1 (MQ=255)
                                                              aGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctac       >  1:427006/1‑81 (MQ=255)
                                                                  ggCAGCAACACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct    <  2:426975/80‑1 (MQ=255)
                                                                    cagcaTCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTag  >  2:427003/1‑80 (MQ=255)
                                                                             |                                                                      
CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAG  >  NC_000913/1979193‑1979340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.