| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 33 (0.950) | 26/160 | 0.4 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 27 (0.780) | 20/160 | 0.9 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGC > NC_000913/2737039‑2737197 | cacaAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTg > 1:591259/1‑80 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 1:232107‑M2/1‑1 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 1:778301‑M2/1‑1 (MQ=255) acaAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTg < 1:591260/79‑1 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGa > 2:778333‑M2/79‑80 (MQ=255) caAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAAt > 2:778110/1‑81 (MQ=255) atcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAAtt > 1:591295‑M2/77‑81 (MQ=255) aaaaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAAtt > 2:591262/1‑80 (MQ=255) aaaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCa < 1:591263/81‑1 (MQ=255) aaaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCa < 2:591264/81‑1 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAg < 2:65945‑M2/12‑1 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGAc < 2:778218‑M2/14‑1 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACgg > 2:591294‑M2/66‑81 (MQ=255) tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACgg > 2:591287‑M2/66‑81 (MQ=255) gTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatg > 1:591265‑M2/1‑73 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACgg < 2:65951‑M2/16‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGaa < 2:4405‑M2/19‑1 (MQ=255) aaaaaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaa < 2:58382‑M2/81‑15 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGAc > 1:1013867‑M2/58‑79 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGAc > 1:591312‑M2/58‑79 (MQ=255) aaaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact < 2:58385‑M2/81‑17 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAag < 2:232033‑M2/25‑1 (MQ=255) tGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttact > 2:591266‑M2/1‑61 (MQ=255) gACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttact < 1:63191‑M2/80‑21 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGt < 2:778229‑M2/29‑1 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGt < 2:58293‑M2/29‑1 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTa < 2:232050‑M2/30‑1 (MQ=255) aCAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactg > 2:591267‑M2/1‑59 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTaaaa > 2:591299‑M2/49‑81 (MQ=255) aaaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgattt > 1:591270‑M2/1‑56 (MQ=255) aaaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgattt > 2:591268‑M2/1‑56 (MQ=255) aaaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgattt > 1:591269‑M2/1‑56 (MQ=255) tatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTAt > 2:591297‑M2/43‑80 (MQ=255) tatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTAt > 1:591301‑M2/43‑80 (MQ=255) tGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgt > 2:591271‑M2/1‑50 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGAc > 2:591318‑M2/40‑80 (MQ=255) aTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgat > 1:591272‑M2/1‑46 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAAt > 2:591317‑M2/38‑81 (MQ=255) tttCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatgg < 2:58367‑M2/81‑38 (MQ=255) aacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACaa < 2:232052‑M2/43‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGa < 1:4383‑M2/46‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGaa > 1:591305‑M2/35‑81 (MQ=255) aaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACAt < 1:58291‑M2/50‑1 (MQ=255) aaacactaacaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACAt > 2:591309‑M2/31‑80 (MQ=255) acaTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 1:66047‑M2/79‑45 (MQ=255) tGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct < 2:778133‑M2/81‑53 (MQ=255) ataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaac > 2:591310‑M2/20‑80 (MQ=255) aCATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:591273‑M2/1‑27 (MQ=255) aCATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 2:591274‑M2/1‑27 (MQ=255) taagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaacaa < 2:232046‑M2/63‑1 (MQ=255) cATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca > 1:591275‑M2/1‑26 (MQ=255) aagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaacaaa > 1:591321‑M2/18‑81 (MQ=255) aTCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag > 2:591276‑M2/1‑25 (MQ=255) aTCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgattcagtgtatgatggtgtttttgaggtgctccag < 2:778140‑M2/81‑57 (MQ=255) gttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATg > 2:591323‑M2/16‑81 (MQ=255) gttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATg < 1:63075‑M2/66‑1 (MQ=255) tggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATgg > 2:591306‑M2/14‑80 (MQ=255) attaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACt > 2:591302‑M2/7‑81 (MQ=255) cTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta > 2:591216‑M2/1‑10 (MQ=255) gAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 1:426909‑M2/80‑73 (MQ=255) gAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 2:778131‑M2/80‑73 (MQ=255) gAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat < 1:426907‑M2/80‑73 (MQ=255) gAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGc > 2:591315/1‑80 (MQ=255) | CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGC > NC_000913/2737039‑2737197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |