| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,291,610 | IS3 (–) +5 bp :: +T | coding (270‑274/1092 nt) | yraK → | putative fimbrial adhesin YraK |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 46 (1.400) +T |
42/158 | 0.0 | 100% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 3291610 = | 0 (0.000) | coding (270/1092 nt) | yraK | putative fimbrial adhesin YraK | |||||
| * | ? | NC_000913 | = 2171428 | NA (NA) | 43 (1.290) | 37/160 | 0.1 | 100% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 3291614 | 0 (0.000) | coding (274/1092 nt) | yraK | putative fimbrial adhesin YraK | |||||
GAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA > NC_000913/315149‑315308 | tggaatgtcgtttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgat < 2:555075‑M1/1‑1 (MQ=255)tggaatgtcgtttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgat < 1:555076‑M1/1‑1 (MQ=255) aaGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctc > 1:54843/1‑81 (MQ=255) gaatgtcgtttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgat > 1:555129‑M1/79‑79 (MQ=255) gggCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAcc < 2:54820/81‑1 (MQ=255) gtttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCa > 2:555125‑M1/72‑80 (MQ=255) gtttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAg < 2:54852‑M1/10‑1 (MQ=255) tttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAg < 2:96191‑M1/10‑1 (MQ=255) ttgcctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGc < 2:349921‑M1/11‑1 (MQ=255) gTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGc > 1:54860/1‑80 (MQ=255) tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa > 2:54863/1‑79 (MQ=255) cctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCaa < 2:54861‑M1/13‑1 (MQ=255) cctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATa > 2:555107‑M1/67‑81 (MQ=255) ctgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAg > 1:555167‑M1/66‑81 (MQ=255) tgtaatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGt < 2:182613‑M1/17‑1 (MQ=255) gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAg < 2:54821/80‑1 (MQ=255) gTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt < 1:54822/81‑1 (MQ=255) taatgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTg > 2:555104‑M1/63‑80 (MQ=255) atgtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGac > 1:555110‑M1/61‑81 (MQ=255) gtggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGacac < 2:782526‑M1/23‑1 (MQ=255) tggttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGacac > 2:555111‑M1/58‑80 (MQ=255) aaGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcgc > 1:54865/1‑81 (MQ=255) gttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACAcgcg < 1:96199‑M1/26‑1 (MQ=255) ttttaatatccaggctgtcattgagtttgtagtatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCgg > 2:555112‑M1/55‑81 (MQ=255) ttttaatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCgg < 2:349949‑M1/27‑1 (MQ=255) cgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGc < 2:54823/81‑1 (MQ=255) taatatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCt > 2:555116‑M1/52‑80 (MQ=255) atatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTaa > 2:555128‑M1/50‑80 (MQ=255) atatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 2:96186‑M1/32‑1 (MQ=255) atatccaggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg > 2:555121‑M1/50‑81 (MQ=255) caggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 2:555122‑M1/45‑81 (MQ=255) aggctgtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 2:182601‑M1/37‑1 (MQ=255) aCCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt > 2:54845/1‑80 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa < 1:54824/81‑1 (MQ=255) cccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa < 1:54825/81‑1 (MQ=255) gCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:54867/1‑81 (MQ=255) gtcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:349933‑M1/43‑1 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 2:54853/1‑81 (MQ=255) tcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAGActc > 1:555106‑M1/38‑80 (MQ=255) tcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:96189‑M1/44‑1 (MQ=255) tcattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:555148‑M1/38‑79 (MQ=255) cattgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:349941‑M1/44‑1 (MQ=255) attgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:555105‑M1/36‑80 (MQ=255) attgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 2:555117‑M1/36‑80 (MQ=255) tgagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 2:349939‑M1/48‑1 (MQ=255) gagtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 2:96213‑M1/48‑1 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:54851/1‑78 (MQ=255) gtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 1:349931‑M1/48‑1 (MQ=255) gtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 2:67635‑M1/48‑1 (MQ=255) gtttgtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt < 2:54862‑M1/48‑1 (MQ=255) gtaatatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:54857‑M1/55‑1 (MQ=255) ccGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg < 1:54826/81‑1 (MQ=255) atatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 2:555102‑M1/24‑80 (MQ=255) atatcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGAc < 1:54866‑M1/58‑1 (MQ=255) tatactgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 2:555101‑M1/23‑81 (MQ=255) ggTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt > 2:54875/1‑80 (MQ=255) atcctgtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:349943‑M1/59‑1 (MQ=255) gTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 2:54827/81‑1 (MQ=255) aCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt > 2:54859/1‑81 (MQ=255) gtctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 2:96200‑M1/64‑1 (MQ=255) tctgatgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 2:555118‑M1/16‑81 (MQ=255) taCGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:54829/79‑1 (MQ=255) atgtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaa > 2:555087‑M1/12‑81 (MQ=255) gtccagtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 1:96192‑M1/72‑1 (MQ=255) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg > 2:54877/1‑81 (MQ=38) agtgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 1:182650‑M1/75‑1 (MQ=255) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa < 2:54830/81‑1 (MQ=35) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc > 1:54864/1‑80 (MQ=31) ctctTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa < 2:54831/81‑1 (MQ=31) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt > 2:96164‑M1/2‑79 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 1:67676‑M1/79‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 2:349953‑M1/79‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 2:67675‑M1/79‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 2:96208‑M1/79‑1 (MQ=255) | GAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCA > NC_000913/315149‑315308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |