| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 3,291,610 | IS3 (–) +5 bp :: +T | coding (270‑274/1092 nt) | yraK → | putative fimbrial adhesin YraK |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 46 (1.400) +T |
42/158 | 0.0 | 100% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 3291610 = | 0 (0.000) | coding (270/1092 nt) | yraK | putative fimbrial adhesin YraK | |||||
| * | ? | NC_000913 | = 2171428 | NA (NA) | 43 (1.290) | 37/160 | 0.1 | 100% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 3291614 | 0 (0.000) | coding (274/1092 nt) | yraK | putative fimbrial adhesin YraK | |||||
CTGGCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCAGGA > NC_000913/3291535‑3291691 | cTGGCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGt < 2:555053‑M2/81‑2 (MQ=255)cTGGCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGt > 1:555052‑M2/1‑80 (MQ=255) tttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGAc < 1:96192‑M2/8‑1 (MQ=255) gCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgat < 2:555055‑M2/81‑5 (MQ=255) gCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtga > 1:555054‑M2/1‑77 (MQ=255) tttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACAt > 2:555087‑M2/72‑81 (MQ=255) cAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatc > 2:555056‑M2/1‑76 (MQ=255) tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGa > 2:555118‑M2/68‑81 (MQ=255) cGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctac > 2:555057‑M2/1‑71 (MQ=255) gCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctaccc > 1:555058‑M2/1‑70 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGAc < 2:96200‑M2/15‑1 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGtata > 2:555101‑M2/61‑81 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGat < 1:349943‑M2/20‑1 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGatat < 1:54866‑M2/22‑1 (MQ=255) tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGatat > 2:555102‑M2/59‑80 (MQ=255) ccTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaa > 1:555059‑M2/1‑63 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTAc < 1:54857‑M2/25‑1 (MQ=255) ctctGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatgg > 2:555062‑M2/1‑59 (MQ=255) ctctGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatat > 1:555060‑M2/1‑59 (MQ=255) ctctGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatat > 2:555061‑M2/1‑59 (MQ=255) ctGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatgga < 1:67439‑M2/80‑24 (MQ=255) ctGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatgga < 2:67443‑M2/80‑24 (MQ=255) tGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatgga > 1:555063‑M2/1‑56 (MQ=255) gCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggaca < 2:182430‑M2/80‑26 (MQ=255) cGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggaca < 1:350105‑M2/79‑26 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAAc < 2:54862‑M2/29‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAAc < 2:67635‑M2/29‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAAc < 1:349931‑M2/29‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTc < 2:96213‑M2/31‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCa < 2:349939‑M2/32‑1 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAAt > 2:555117‑M2/47‑80 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAAt > 1:555105‑M2/47‑80 (MQ=255) gTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggc > 2:555064‑M2/1‑51 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATg < 1:349941‑M2/35‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGa < 1:96189‑M2/36‑1 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGAc < 1:349933‑M2/37‑1 (MQ=255) gagtctactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGa > 1:555106‑M2/45‑80 (MQ=255) agtttactcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGa > 1:555148‑M2/44‑79 (MQ=255) aGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggccta > 1:555065‑M2/1‑48 (MQ=255) aGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggccta > 2:555067‑M2/1‑48 (MQ=255) aGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcct > 2:555066‑M2/1‑48 (MQ=255) ggCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcct < 2:67440‑M2/79‑33 (MQ=255) aGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:555068‑M2/1‑44 (MQ=255) actcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCt < 2:182601‑M2/42‑1 (MQ=255) actcacttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTg > 2:555122‑M2/39‑81 (MQ=255) aaaCTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgagg > 1:555069‑M2/1‑40 (MQ=255) aaCTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggtt > 2:555070‑M2/1‑39 (MQ=255) cttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGatat < 2:96186‑M2/48‑1 (MQ=255) cttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGatat > 2:555121‑M2/34‑81 (MQ=255) ttagccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGatat > 2:555128‑M2/33‑80 (MQ=255) cTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttct < 1:67442‑M2/81‑45 (MQ=255) agccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTa > 2:555116‑M2/31‑80 (MQ=255) gTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:555071‑M2/1‑34 (MQ=255) gTCTATATGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:555072‑M2/1‑34 (MQ=255) ccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTaaaa < 2:349949‑M2/53‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATACTACAAACTCAATGACAGCCTGGATATTaaaa > 2:555112‑M2/29‑81 (MQ=255) cgcgtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAAc < 1:96199‑M2/54‑1 (MQ=255) atatGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 2:67441‑M2/80‑51 (MQ=255) tatGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttc < 1:96396‑M2/80‑52 (MQ=255) tatGGTCAGCCCCGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttc > 1:555073‑M2/1‑29 (MQ=255) gtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACcac < 2:782526‑M2/57‑1 (MQ=255) gtgtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACca > 2:555111‑M2/25‑80 (MQ=255) gtccactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACAt > 1:555110‑M2/23‑81 (MQ=255) cactattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTa > 2:555104‑M2/20‑80 (MQ=255) actattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACa < 2:182613‑M2/63‑1 (MQ=255) ctattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAg > 1:555167‑M2/18‑81 (MQ=255) tattgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAgg > 2:555107‑M2/17‑81 (MQ=255) ccccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc > 2:555074‑M2/1‑20 (MQ=255) ttgctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAgg < 2:54861‑M2/65‑1 (MQ=255) cccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccg < 2:55048‑M2/81‑63 (MQ=255) cccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccg < 1:55066‑M2/81‑63 (MQ=255) ccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgg > 2:554978‑M2/1‑18 (MQ=255) ccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgg > 2:554990‑M2/1‑18 (MQ=255) ccGTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgg > 1:554993‑M2/1‑18 (MQ=255) gctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCaa < 2:349921‑M2/68‑1 (MQ=255) gTACTTACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggac < 1:350104‑M2/81‑66 (MQ=255) ctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCaaa < 2:96191‑M2/69‑1 (MQ=255) ctgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAAc < 2:54852‑M2/70‑1 (MQ=255) tgggtaagatCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAAc > 2:555125‑M2/11‑80 (MQ=255) ttACCACCACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgag < 2:96380‑M2/81‑70 (MQ=255) accaccACTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggc < 1:67452‑M2/81‑72 (MQ=255) atCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTc > 1:555129‑M2/3‑79 (MQ=255) atCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCa < 2:555075‑M2/79‑1 (MQ=255) atCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCa < 1:555076‑M2/79‑1 (MQ=255) accacTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgc < 2:182444‑M2/81‑75 (MQ=255) accacTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgc > 1:554967‑M2/1‑7 (MQ=255) cacTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgcca > 2:554979‑M2/1‑5 (MQ=255) acTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccac > 1:554998‑M2/1‑4 (MQ=255) acTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCAGGa > 1:555156/1‑81 (MQ=255) acTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCAGGa > 1:555113/1‑81 (MQ=255) | CTGGCAATACGCCTGTTCCTGCTCTGCGGGTAAGGCAGTTAAACTTGTCTATATGGTCAGCCCCGTACTTACCACCACTGGACATCAGACAGGATATTACAAACTCAATGACAGCCTGGATATTAAAACCACATTACAGGCAAACGACATTCCAGGA > NC_000913/3291535‑3291691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |