mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,144,643 | 0 | G | T | 32.8% | 213.0 / 119.1 | 134 | E460* (GAG→TAG) | yegE | putative diguanylate cyclase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.6% | 410.4 / 119.1 | 239 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 129 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225281 | NA (NA) | 18 (0.120) | 15/290 | 13.4 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 1018982 | 149 (1.000) | 13 (0.090) | 13/278 | 13.9 | 8.7% | intergenic (+45/+31) | matP/ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| ? | NC_000913 | = 1018986 | 135 (0.980) | intergenic (+49/+27) | matP/ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) | |||||
| * | ? | NC_000913 | = 2704303 | 116 (0.780) | 14 (0.100) | 12/272 | 14.1 | 11.5% | intergenic (‑240/+32) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | NC_000913 | = 2704308 | 110 (0.810) | intergenic (‑245/+27) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | NC_000913 | = 3946053 | 6 (0.040) | 11 (0.080) | 11/292 | 15.5 | 65.3% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 11 (0.080) | 11/292 | 15.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 985841 = | 166 (1.110) | 10 (0.070) | 9/276 | 16.0 | 6.1% | intergenic (‑132/+53) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| ? | NC_000913 | 985869 = | 153 (1.120) | intergenic (‑160/+25) | aspC/ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) | |||||
| * | ? | NC_000913 | = 2405625 | 149 (1.000) | 8 (0.060) | 8/286 | 17.1 | 5.6% | intergenic (‑553/+78) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | NC_000913 | = 2405660 | 128 (0.900) | intergenic (‑588/+43) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 49 (0.340) | 8/288 | 17.2 | 75.0% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 17 (0.110) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 49 (0.340) | 8/288 | 17.2 | 24.6% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 156 (1.050) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4040683 | 122 (0.820) | 44 (0.300) | 8/296 | 17.5 | 24.6% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 150 (1.020) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||