| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,056,675 | (GCACCG)2→1 | coding (802‑807/927 nt) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6056667 | 6056672 | 6 | 20 [0] | [0] 20 | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6056673 = | 0 (0.000) | 20 (0.730) | 18/274 | 0.6 | 100% | coding (800/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056666 | 0 (0.000) | coding (793/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
GACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056824‑6056673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgccgTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTG < NC_002947/6056666‑6056536 GACCTTCGACAGCTCACGCATGTCTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGT < 6:149923/148‑1GACCTTCGACAGCGCACGCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGT < 7:101763/148‑1 CTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCC > 8:53744/1‑148 ACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGC > 5:134440/1‑148 ACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTAGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGCTCGGTGACGTCAACGGGCGC > 8:60773/1‑148 CTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGA < 1:53905/147‑1 CTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGAGCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGAT < 2:57523/148‑1 AGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCCATGGCTACCGTGCGGAACGGTGCCGTCCACGGGCGCACTTCGATGcc > 6:121538/1‑146 GGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAAAGGTGCCGTCAACGGGCGCACTTCGATGACG > 3:95717/1‑148 TTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGG < 2:73572/148‑1 TTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGG < 4:140305/148‑1 TGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGG > 6:25854/1‑147 GTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGC > 8:68823/1‑148 CAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTG < 7:90035/148‑1 GGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGT < 6:134440/148‑1 CGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATAC < 6:36003/148‑1 GATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGACCGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAA > 8:37768/1‑148 ATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGAGGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAA < 3:106758/147‑1 GGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCAT < 7:12011/146‑1 GGCCGCGGGAAGCGGGCGCGCCAGGGGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATG < 5:94841/147‑1 GCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGT < 8:35805/147‑1 AGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGT > 4:119442/1‑148 CGTGCGGAACGGTGCCGTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTG > 3:81278/1‑148 GACCTTCGACAGCTCACTCATGACTCAGGCCGGTTGTTCCGCAGGGTTTTTGGCGACCGAGCACAGGCGGATCGAATCGGCGAGGATCTCGATGGCCTTTGGCCGCGGGAAGCTGGCGCGCCAGGCGATGGCTACCGTGCGGAACGGTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6056824‑6056673‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgccgTCAACGGGCGCACTTCGATGACGCCGGGGGCATAGTGGTGGCTGTGCACTGCCGACAGCGGCAAGATCGATACGCCAAGGCCGGAAGCCACCATGTGACGGATGGTTTCCAGTGAGCTGGACTCGACCGTG < NC_002947/6056666‑6056536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |