| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,056,675 | (GCACCG)2→1 | coding (802‑807/927 nt) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6056667 | 6056672 | 6 | 20 [0] | [0] 20 | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6056673 = | 0 (0.000) | 20 (0.730) | 18/274 | 0.6 | 100% | coding (800/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
| ? | NC_002947 | = 6056666 | 0 (0.000) | coding (793/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator | |||||
CACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTC > NC_002947/6056536‑6056803 | cacGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacg > 3:81278‑M2/1‑131 (MQ=255) aCCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagct > 4:119442‑M2/1‑106 (MQ=255) acaTGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggc < 8:35805‑M2/147‑52 (MQ=255) caTGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcccctggcgcgcccgcttcccgcggcc < 5:94841‑M2/147‑53 (MQ=255) aTGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggcc < 7:12011‑M2/146‑53 (MQ=255) ttCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccctcgcctggcgcgccagcttcccgcggccaaaggccat < 3:106758‑M2/147‑62 (MQ=255) ttCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccggtccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatc > 8:37768‑M2/1‑86 (MQ=255) gTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccg < 6:36003‑M2/148‑76 (MQ=255) accacTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccc < 6:134440‑M2/148‑110 (MQ=255) cacTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctg < 7:90035‑M2/148‑112 (MQ=255) gCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaac > 8:68823‑M2/1‑31 (MQ=255) ccccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaa < 2:73572‑M2/148‑120 (MQ=255) ccccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaa < 4:140305‑M2/148‑120 (MQ=255) ccccGGCGTCATCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaaca > 6:25854‑M2/1‑29 (MQ=255) cGTCATCGAAGTGCGCCCGTTGAcggcacctttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcc > 3:95717‑M2/1‑23 (MQ=255) ggcatCGAAGTGCGCCCGTGGAcggcaccgttccgcacggtagccatggcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcct > 6:121538‑M2/3‑22 (MQ=255) aTCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagctcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgag < 2:57523‑M2/148‑130 (MQ=255) tCGAAGTGCGCCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgag < 1:53905‑M2/147‑130 (MQ=255) gcgcCCGTTGAcgtcaccgagccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatctagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagt > 8:60773‑M2/1‑11 (MQ=255) gcgcCCGTTGAcggcaccgttccgcacggtagccatcgcctggcgcgccagcttcccgcggccaaaggccatcgagatcctcgccgattcgatccgcctgtgctcggtcgccaaaaaccctgcggaacaaccggcctgagtcatgagt > 5:134440‑M2/1‑11 (MQ=255) | CACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTC > NC_002947/6056536‑6056803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |