Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	6,056,675	(GCACCG)2→1	coding (802‑807/927 nt)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	6056667	6056672	6	20 [0]	[0] 20	oxyR	oxidative and nitrosative stress transcriptional dual regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6056673 =	0 (0.000)	20 (0.730)	18/274	0.6	100%	coding (800/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056666	0 (0.000)					coding (793/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

CGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGT  >  NC_002947/6056542‑6056809                                                                                                                                    |                                                                                                                                         cacggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACg                                                                                                                          >  3:81278‑M1/132‑148 (MQ=255)                          accatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCt                                                                                                 >  4:119442‑M1/107‑148 (MQ=255)                                    acatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGc                                                                                        <  8:35805‑M1/51‑1 (MQ=255)                                     catggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCCCCTGGCGCGCCCGCTTCCCGCGGcc                                                                                       <  5:94841‑M1/52‑1 (MQ=255)                                      atggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGcc                                                                                       <  7:12011‑M1/52‑1 (MQ=255)                                              ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCCTCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCAt                                                                              <  3:106758‑M1/61‑1 (MQ=255)                                              ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGGTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATc                                                                             >  8:37768‑M1/87‑148 (MQ=255)                                                           gtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCg                                                                <  6:36003‑M1/75‑1 (MQ=255)                                                                                             accactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAAccc                              <  6:134440‑M1/109‑1 (MQ=255)                                                                                               cactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTg                            <  7:90035‑M1/111‑1 (MQ=255)                                                                                                     gcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaac                      >  8:68823‑M1/32‑148 (MQ=255)                                                                                                       ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaa                    <  2:73572‑M1/119‑1 (MQ=255)                                                                                                       ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaa                    <  4:140305‑M1/119‑1 (MQ=255)                                                                                                       ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaaca                     >  6:25854‑M1/30‑147 (MQ=255)                                                                                                             cgtcatcgaagtgcgcccgttgaCGGCACCTTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGcc              >  3:95717‑M1/24‑148 (MQ=255)                                                                                                              ggcatcgaagtgcgcccgtggaCGGCACCGTTCCGCACGGTAGCCATGGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCt             >  6:121538‑M1/23‑148 (MQ=255)                                                                                                                 atcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGCTCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAg          <  2:57523‑M1/129‑1 (MQ=255)                                                                                                                  tcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAg          <  1:53905‑M1/129‑1 (MQ=255)                                                                                                                         gcgcccgttgaCGTCACCGAGCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCTAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtgagt  >  8:60773‑M1/12‑148 (MQ=255)                                                                                                                         gcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtgagt  >  5:134440‑M1/12‑148 (MQ=255)                                                                                                                                    |                                                                                                                                         CGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGT  >  NC_002947/6056542‑6056809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑