Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_002947 | 6,056,675 | (GCACCG)2→1 | coding (802‑807/927 nt) | oxyR → | oxidative and nitrosative stress transcriptional dual regulator |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_002947 | 6056667 | 6056672 | 6 | 20 [0] | [0] 20 | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6056673 = | 0 (0.000) | 20 (0.730) | 18/274 | 0.6 | 100% | coding (800/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
? | NC_002947 | = 6056666 | 0 (0.000) | coding (793/927 nt) | oxyR | oxidative and nitrosative stress transcriptional dual regulator |
CGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGT > NC_002947/6056542‑6056809 | cacggtcgagtccagctcactggaaaccatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACg > 3:81278‑M1/132‑148 (MQ=255) accatccgtcacatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCt > 4:119442‑M1/107‑148 (MQ=255) acatggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGc < 8:35805‑M1/51‑1 (MQ=255) catggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCCCCTGGCGCGCCCGCTTCCCGCGGcc < 5:94841‑M1/52‑1 (MQ=255) atggtggcttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGcc < 7:12011‑M1/52‑1 (MQ=255) ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCCTCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCAt < 3:106758‑M1/61‑1 (MQ=255) ttccggccttggcgtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGGTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATc > 8:37768‑M1/87‑148 (MQ=255) gtatcgatcttgccgctgtcggcagtgcacagccaccactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCg < 6:36003‑M1/75‑1 (MQ=255) accactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAAccc < 6:134440‑M1/109‑1 (MQ=255) cactatgcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTg < 7:90035‑M1/111‑1 (MQ=255) gcccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaac > 8:68823‑M1/32‑148 (MQ=255) ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaa < 2:73572‑M1/119‑1 (MQ=255) ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaacaa < 4:140305‑M1/119‑1 (MQ=255) ccccggcgtcatcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGaaca > 6:25854‑M1/30‑147 (MQ=255) cgtcatcgaagtgcgcccgttgaCGGCACCTTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGcc > 3:95717‑M1/24‑148 (MQ=255) ggcatcgaagtgcgcccgtggaCGGCACCGTTCCGCACGGTAGCCATGGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCt > 6:121538‑M1/23‑148 (MQ=255) atcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGCTCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAg < 2:57523‑M1/129‑1 (MQ=255) tcgaagtgcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAg < 1:53905‑M1/129‑1 (MQ=255) gcgcccgttgaCGTCACCGAGCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCTAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtgagt > 8:60773‑M1/12‑148 (MQ=255) gcgcccgttgaCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCAtgagt > 5:134440‑M1/12‑148 (MQ=255) | CGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAGGCCATCGAGATCCTCGCCGATTCGATCCGCCTGTGCTCGGTCGCCAAAAACCCTGCGGAACAACCGGCCTGAGTCATGAGT > NC_002947/6056542‑6056809 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |