mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,311,197 | 0 | G | T | 26.8% | 166.5 / 20.8 | 98 | E37* (GAA→TAA) | tonB | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.0% | 71.8 / 23.4 | 55 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 22.9% | 126.7 / 11.6 | 71 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.1% | 94.1 / 24.5 | 69 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,529 | 0 | C | G | 20.6% | 149.0 / 14.6 | 70 | S31C (TCC→TGC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 32 (0.290) | 28/492 | 3.7 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 16 (0.150) | 15/484 | 6.7 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1158504 = | 75 (0.670) | 18 (0.170) +CAGATTGGTGAATA |
14/472 | 6.9 | 19.1% | coding (636/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| ? | NC_000913 | = 1158538 | 87 (0.770) | coding (670/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component | |||||
| * | ? | NC_000913 | = 1242594 | 121 (1.080) | 4 (0.040) | 4/464 | 11.7 | 3.5% | coding (487/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | NC_000913 | = 1242576 | 108 (1.030) | coding (505/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | NC_000913 | = 4472134 | 133 (1.180) | 4 (0.040) | 4/482 | 12.0 | 3.2% | coding (262/936 nt) | pyrB | aspartate carbamoyltransferase, catalytic subunit |
| ? | NC_000913 | = 4472183 | 112 (1.030) | coding (213/936 nt) | pyrB | aspartate carbamoyltransferase, catalytic subunit | |||||
| * | ? | NC_000913 | = 3498081 | 140 (1.240) | 3 (0.030) | 3/482 | 12.7 | 2.1% | coding (254/1374 nt) | cysG | fused siroheme synthase 1,3‑dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase |
| ? | NC_000913 | = 3498086 | 140 (1.290) | coding (259/1374 nt) | cysG | fused siroheme synthase 1,3‑dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase | |||||
| * | ? | NC_000913 | 3242761 = | 137 (1.220) | 3 (0.030) | 3/482 | 12.7 | 2.2% | coding (554/1488 nt) | uxaA | altronate hydrolase |
| ? | NC_000913 | 3242787 = | 134 (1.240) | coding (528/1488 nt) | uxaA | altronate hydrolase | |||||
| * | ? | NC_000913 | 208127 = | 110 (0.980) | 3 (0.030) | 3/482 | 12.7 | 2.7% | coding (3002/3483 nt) | dnaE | DNA polymerase III alpha subunit |
| ? | NC_000913 | 208161 = | 110 (1.010) | coding (3036/3483 nt) | dnaE | DNA polymerase III alpha subunit | |||||
| * | ? | NC_000913 | 4005815 = | 114 (1.010) | 3 (0.030) | 3/484 | 12.8 | 2.6% | intergenic (+84/‑49) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase |
| ? | NC_000913 | 4005837 = | 116 (1.070) | intergenic (+106/‑27) | pldA/recQ | outer membrane phospholipase A/ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | 3978105 = | 107 (0.950) | 3 (0.030) | 3/484 | 12.8 | 2.9% | coding (581/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| ? | NC_000913 | 3978127 = | 100 (0.920) | coding (603/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase | |||||