mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 244 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2866995 | 314 (0.880) | 10 (0.030) | 9/134 | NT | 3.4% | intergenic (‑394/+59) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | = 2867006 | 306 (1.030) | intergenic (‑405/+48) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
| * | ? | USA300TCH1516_ALE | = 2863074 | 435 (1.220) | 6 (0.020) | 6/150 | NT | 1.5% | intergenic (+44/+16) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2864026 | NA (NA) | intergenic (‑439/‑19) | USA300HOU_RS14670/USA300HOU_RS14675 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2850830 | 262 (0.730) | 5 (0.020) | 4/132 | NT | 2.2% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2850851 | 239 (0.810) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2850817 = | 278 (0.780) | 5 (0.020) | 5/132 | NT | 2.1% | intergenic (+16/+103) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2850866 = | 239 (0.810) | intergenic (+65/+54) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2797815 | 329 (0.920) | 14 (0.040) | 9/142 | NT | 4.5% | intergenic (+103/+164) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | = 2797828 | 304 (0.960) | intergenic (+116/+151) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||
| * | ? | USA300TCH1516_ALE | = 2751374 | 349 (0.980) | 10 (0.030) | 6/146 | NT | 3.0% | intergenic (‑222/+39) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase |
| ? | USA300TCH1516_ALE | = 2751393 | 333 (1.020) | intergenic (‑241/+20) | betA/gbsA | Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2733754 = | 361 (1.010) | 9 (0.030) | 8/146 | NT | 2.8% | intergenic (+67/+62) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase |
| ? | USA300TCH1516_ALE | 2733788 = | 304 (0.930) | intergenic (+101/+28) | cocE/panD | Cocaine esterase/Aspartate 1‑decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 2699646 | 317 (0.890) | 8 (0.030) | 5/122 | NT | 3.0% | intergenic (+53/+37) | copZ/ldhD_2 | Copper chaperone CopZ/D‑lactate dehydrogenase |
| ? | USA300TCH1516_ALE | = 2699665 | 281 (1.040) | intergenic (+72/+18) | copZ/ldhD_2 | Copper chaperone CopZ/D‑lactate dehydrogenase | |||||
| * | ? | USA300TCH1516_ALE | 2696548 = | 357 (1.000) | 11 (0.040) | 9/140 | NT | 3.4% | intergenic (+100/‑140) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A |
| ? | USA300TCH1516_ALE | 2696587 = | 310 (0.990) | intergenic (+139/‑101) | USA300HOU_RS13875/copA | hypothetical protein/Copper‑exporting P‑type ATPase A | |||||
| * | ? | USA300TCH1516_ALE | 2687471 = | 239 (0.670) | 9 (0.030) | 7/138 | NT | 4.0% | intergenic (+25/+44) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein |
| ? | USA300TCH1516_ALE | 2687511 = | 222 (0.720) | intergenic (+65/+4) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein | |||||