mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 36,378 | C→T | L58L (TTG→TTA) | tpn ← | IS431mec transposase |
| JC | 62,818 | +CAATTT | intergenic (+83/+228) | USA300HOU_0056 → / ← speG | hypothetical protein/diamine N‑acetyltransferase |
| RA | 742,735 | C→T | intergenic (+572/‑2354) | yetJ → / → sarX | hypothetical membrane protein/possible staphylococcal accessory protein X |
| RA | 849,203 | A→G | Y110C (TAT→TGT) | yvcJ → | ATP‑binding protein |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,774,221 | G→T | A27D (GCC→GAC) | hemA ← | glutamyl‑tRNA reductase |
| RA | 1,891,904 | (T)6→5 | coding (103/501 nt) | rot ← | repressor of toxins Rot |
| RA | 1,902,155 | C→T | A105A (GCC→GCT) | arsB → | ArsB arsenite‑antimonite efflux family transporter, membrane subunit |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,373,019 | G→A | Q253* (CAG→TAG) | pbuG ← | NCS2 family nucleobase:cation symporter‑2 |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP000730 | 2176703–2181102 | 2181102 | 1–4400 | 9 [6] | [7] 8 | [rrl4]–[rrs4] | [rrl4],[rrs4] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 34 (0.950) | 24 (0.940) +40 bp |
16/200 | 0.3 | 49.8% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||
| * | ? | CP000730 | 2085296 = | 38 (1.060) | 15 (0.460) | 8/252 | 1.7 | 35.2% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 21 (0.650) | intergenic (+57/+1062) | int/hlgB | bacteriophage integrase/possible leukocidin subunit | |||||
| * | ? | CP000730 | 2476329 = | 30 (0.840) | 9 (0.260) | 5/268 | 2.6 | 23.5% | intergenic (‑74/+166) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR |
| ? | CP000730 | = 2476325 | 30 (0.870) | intergenic (‑70/+170) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR | |||||