breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence (highest frequency 20 of 58 shown, sorted by frequency from high to low)
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,929,861	0	T	C	76.6%	287.3 / 71.0	138	intergenic (‑944/‑224)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,867	0	G	T	76.3%	236.7 / 106.5	139	intergenic (‑950/‑218)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,870	0	A	C	75.7%	340.9 / 83.9	140	intergenic (‑953/‑215)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,875	0	T	C	75.7%	275.6 / 80.2	141	intergenic (‑958/‑210)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,873	0	C	A	75.2%	237.6 / 115.2	141	intergenic (‑956/‑212)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,866	0	G	T	75.0%	222.3 / 114.2	139	intergenic (‑949/‑219)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,872	0	G	A	75.0%	233.7 / 94.5	141	intergenic (‑955/‑213)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,842	0	T	.	72.1%	280.9 / 195.2	147	intergenic (‑925/‑243)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,843	0	A	.	72.1%	284.3 / 190.1	147	intergenic (‑926/‑242)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,848	0	C	A	71.1%	203.6 / 139.7	149	intergenic (‑931/‑237)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,917	0	C	T	70.2%	193.0 / 122.9	151	intergenic (‑1000/‑168)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,918	0	A	G	69.7%	250.9 / 107.8	152	intergenic (‑1001/‑167)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,865	0	A	C	67.6%	264.9 / 110.9	139	intergenic (‑948/‑220)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,812	0	G	A	67.3%	115.2 / 100.3	110	intergenic (‑895/‑273)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,862	1	.	T	66.9%	352.0 / 180.4	139	intergenic (‑945/‑223)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,925	0	T	A	66.7%	190.1 / 134.7	132	intergenic (‑1008/‑160)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,928	0	T	A	66.7%	197.7 / 134.5	132	intergenic (‑1011/‑157)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	1,929,930	0	T	A	66.7%	188.5 / 142.8	132	intergenic (‑1013/‑155)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
*	CP000730	35,876	0	C	T	64.9%	‑0.0 / 153.4	148	intergenic (+107/+1)	rlmH/tpn	hypothetical protein/IS431mec transposase
*	CP000730	36,269	0	C	T	64.5%	442.0 / inf	744	A95T (GCA→ACA)	tpn	IS431mec transposase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 245997	33 (0.860)	3 (0.080)	3/278	4.0	8.5%	intergenic (+324/‑59)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein
	?	CP000730	= 246015	33 (0.910)					intergenic (+342/‑41)	USA300HOU_0219/USA300HOU_0220	M23 family peptidase/maltose/maltodextrin ABC superfamily ATP binding cassette transporter, ABC protein