mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 39,378 | C→A | D586Y (GAT→TAT) | mecA ← | penicillin binding protein 2 prime |
| RA | 367,644 | G→T | intergenic (‑96/‑20) | nanA ← / → nagC | N‑acetylneuraminate lyase/possible transcriptional regulator |
| RA | 463,014 | C→A | E47* (GAA→TAA) | USA300HOU_0437 ← | hypothetical protein |
| RA | 469,786 | A→G | G118G (GGA→GGG) | USA300HOU_0445 → | hypothetical protein |
| RA | 479,553 | G→A | A194T (GCA→ACA) | USA300HOU_0458 → | hypothetical protein |
| RA | 638,614 | G→T | T14K (ACA→AAA) | thiD ← | phosphomethylpyrimidine kinase |
| RA | 707,879 | A→T | L11I (TTA→ATA) | mntB ← | ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 790,778 | G→A | intergenic (+277/‑197) | kipA → / → ltaS | possible allophanate hydrolase subunit 2/possible phosphatidylglycerol‑‑membrane‑oligosaccharide glycerophosphotransferase |
| RA | 1,232,465 | G→C | A124P (GCG→CCG) | prkC → | non‑specific serine/threonine protein kinase |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,440,007 | Δ1 bp | coding (34/201 nt) | cspA ← | cold shock protein CspA |
| RA | 1,474,639 | C→G | A9129P (GCA→CCA) | ebh ← | extracellular matrix binding protein |
| RA | 1,481,355 | G→T | A6890E (GCA→GAA) | ebh ← | extracellular matrix binding protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 1,744,454 | C→T | G73D (GGC→GAC) | apt ← | adenine phosphoribosyltransferase |
| RA | 1,797,772 | G→C | R7G (CGC→GGC) | phoR ← | sensor histidine kinase |
| JC | 1,909,272 | Δ48 bp | coding (79‑126/303 nt) | USA300HOU_1771 → | hypothetical membrane protein |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,021,817 | C→T | V139I (GTT→ATT) | ykhA ← | acyl‑CoA hydrolase |
| RA | 2,027,751 | C→G | V66L (GTA→CTA) | vraS ← | sensor histidine kinase VraS |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,289,252 | C→A | A80S (GCT→TCT) | ybbP ← | hypothetical membrane protein |
| RA | 2,360,799 | A→G | G66G (GGT→GGC) | adk ← | adenylate kinase |
| RA | 2,372,863 | C→G | G305R (GGA→CGA) | pbuG ← | NCS2 family nucleobase:cation symporter‑2 |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| RA | 2,679,710 | G→T | G65V (GGC→GTC) | cbpD → | possible secretory antigen |
| RA | 2,709,297 | T→A | K544* (AAA→TAA) | oatA ← | possible acetyltransferase |
| RA | 2,856,087 | T→A | P80P (CCT→CCA) | USA300HOU_2698 → | hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 102 (1.260) | 54 (0.940) +40 bp |
44/196 | 0.3 | 42.7% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||