breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730512,6430AG41.2% 91.8 / 190.3 160intergenic (+711/‑150)recR/rrs1recombination protein RecR/16S ribosomal RNA
*CP000730111,5160CA36.9% 175.7 / 118.1 122Q196K (CAA→AAA) USA300HOU_0110possible staphylococcal tandem lipoprotein
*CP000730111,5120AG36.8% 132.7 / 130.7 125S194S (TCA→TCG) USA300HOU_0110possible staphylococcal tandem lipoprotein

Marginal new junction evidence (lowest skew 10 of 48 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 120532351 (0.630)32 (0.550)
+38 bp		 8/200 8.2 39.9% intergenic (+459/‑365) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 2478252 = 82 (1.010)intergenic (+139/+932) USA300HOU_2340/htrB hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein
* ? CP000730 = 120532351 (0.630)32 (0.550)
+38 bp		 8/200 8.2 41.8% intergenic (+459/‑365) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 = 2072043 72 (0.890)intergenic (+538/+35) ykgB/USA300HOU_1927 hypothetical protein/hypothetical protein
* ? CP000730 = 120532351 (0.630)32 (0.550)
+38 bp		 8/200 8.2 46.4% intergenic (+459/‑365) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 = 1443739 NA (NA)intergenic (‑312/+41) USA300HOU_1341/brnQ2 IS1272 transposase/LIVCS family branched chain amino acid:cation symporter
* ? CP000730 = 120532351 (0.630)32 (0.550)
+38 bp		 8/200 8.2 41.6% intergenic (+459/‑365) yfiE/lspA possible lactoylglutathione lyase/A8 family signal peptidase II
?CP000730 1426517 = 73 (0.900)intergenic (‑248/+724) pstS/yitL phosphate ABC superfamily ATP binding cassette transporter, binding protein/hypothetical protein
* ? CP000730 = 195477764 (0.790)7 (0.090) 6/254 11.7 10.9% intergenic (‑39/+26) epiB/epiA lantibiotic epidermin biosynthesis protein EpiB/lantibiotic epidermin EpiA
?CP000730 = 1954783 56 (0.750)intergenic (‑45/+20) epiB/epiA lantibiotic epidermin biosynthesis protein EpiB/lantibiotic epidermin EpiA
* ? CP000730 329202 =98 (1.210)6 (0.080) 6/256 11.8 6.4% intergenic (+70/+73) USA300HOU_0295/USA300HOU_0296 hypothetical membrane protein/hypothetical protein
?CP000730 329255 = 86 (1.150)intergenic (+123/+20) USA300HOU_0295/USA300HOU_0296 hypothetical membrane protein/hypothetical protein
* ? CP000730 = 21219785 (0.060)6 (0.080) 6/262 12.0 55.8% coding (132/177 nt) USA300HOU_1999 hypothetical bacteriophage protein
?CP000730 = 2122008 NA (NA)coding (102/177 nt) USA300HOU_1999 hypothetical bacteriophage protein
* ? CP000730 = 16014613 (0.040)6 (0.080) 6/262 12.0 67.8% coding (132/177 nt) USA300HOU_1484 hypothetical bacteriophage protein
?CP000730 = 1601491 NA (NA)coding (102/177 nt) USA300HOU_1484 hypothetical bacteriophage protein
* ? CP000730 = 202164293 (1.150)5 (0.070) 5/250 12.2 5.7% intergenic (+201/+59) yfkA/ykhA possible dehydrogenase/acyl‑CoA hydrolase
?CP000730 = 2021681 81 (1.110)intergenic (+240/+20) yfkA/ykhA possible dehydrogenase/acyl‑CoA hydrolase
* ? CP000730 = 162354469 (0.850)7 (0.090) 5/254 12.4 9.8% intergenic (+29/+54) graE/malA AraC family transcriptional regulator/alpha‑glucosidase
?CP000730 = 1623575 66 (0.890)intergenic (+60/+23) graE/malA AraC family transcriptional regulator/alpha‑glucosidase