mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,287,297 | 0 | A→. | 100.0% | 3.0 | 3 | intergenic (+272/‑129) | agaI/yraH | galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 4,038,403 | 0 | C→A | 100.0% | 2.6 | 3 | noncoding (885/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 1,297,049 | 1 | .→T | 1.1% | 1.8 0.0 ‑0.1 | 179 | coding (1073/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| * | NC_000913 | 1,348,317 | 1 | .→T | 1.1% | 1.8 0.0 ‑0.1 | 182 | coding (596/1935 nt) | rnb | ribonuclease II |
| * | NC_000913 | 1,635,602 | 2 | .→T | 1.0% | 1.8 0.0 ‑0.3 | 198 | coding (246/963 nt) | stfQ | Qin prophage; putative side tail fibre assembly protein |
| * | NC_000913 | 4,258,419 | 1 | .→G | 1.2% | 1.8 0.0 ‑0.1 | 169 | coding (678/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 1,903,567 | 1 | .→G | 1.2% | 1.7 0.0 ‑0.3 | 169 | coding (486/801 nt) | manY | mannose‑specific enzyme IIC component of PTS |
| * | NC_000913 | 3,158,997 | 1 | .→C | 1.1% | 1.6 0.0 ‑0.4 | 174 | coding (2150/2220 nt) | ygiQ | Radical SAM superfamily protein |
| * | NC_000913 | 1,297,049 | 2 | .→C | 1.1% | 1.5 0.0 ‑0.1 | 179 | coding (1073/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| * | NC_000913 | 1,645,621 | 1 | .→A | 1.2% | 1.5 0.0 ‑0.1 | 168 | coding (13/288 nt) | relE | Qin prophage; toxin of the RelE‑RelB toxin‑antitoxin system |
| * | NC_000913 | 1,909,314 | 1 | .→G | 1.2% | 1.5 0.0 ‑0.4 | 170 | coding (786/792 nt) | kdgR | KDG regulon transcriptional repressor |
| * | NC_000913 | 1,120,060 | 1 | .→G | 1.1% | 1.4 0.0 ‑0.5 | 181 | coding (527/1119 nt) | solA | N‑methyltryptophan oxidase, FAD‑binding |
| * | NC_000913 | 1,507,411 | 1 | .→C | 1.1% | 1.4 0.0 ‑0.2 | 174 | coding (631/1962 nt) | ydcP | putative peptidase |
| * | NC_000913 | 4,507,746 | 0 | G→T | 100.0% | 1.4 | 1 | T291K (ACA→AAA) | insI1 | IS30 transposase |
| * | NC_000913 | 2,907,240 | 1 | .→C | 1.2% | 1.3 0.0 ‑0.0 | 173 | coding (702/1299 nt) | eno | enolase |
| * | NC_000913 | 1,635,602 | 1 | .→G | 1.0% | 1.2 0.0 ‑0.2 | 198 | coding (246/963 nt) | stfQ | Qin prophage; putative side tail fibre assembly protein |
| * | NC_000913 | 3,147,275 | 1 | .→G | 1.2% | 1.2 0.0 ‑0.2 | 169 | pseudogene (417/420 nt) | yghX | pseudogene, dienlactone hydrolase family |
| * | NC_000913 | 3,287,256 | 0 | A→C | 100.0% | 1.2 | 1 | intergenic (+231/‑170) | agaI/yraH | galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,287,268 | 0 | T→C | 100.0% | 1.2 | 1 | intergenic (+243/‑158) | agaI/yraH | galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,361,062 | 0 | C→G | 100.0% | 1.2 | 1 | intergenic (+446/‑114) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| * | NC_000913 | 1,651,262 | 0 | T→G | 100.0% | 1.1 | 1 | pseudogene (418/693 nt) | insD1 | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| * | NC_000913 | 2,049,312 | 1 | .→T | 1.2% | 1.1 0.0 ‑0.0 | 170 | coding (4375/7077 nt) | yeeJ | putative adhesin |
| * | NC_000913 | 3,488,904 | 1 | .→C | 1.1% | 1.0 0.0 ‑0.1 | 178 | intergenic (+11/+56) | yhfK/argD | putative transporter, FUSC superfamily inner membrane protein/bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| * | NC_000913 | 1,694,746 | 2 | .→T | 1.1% | 0.9 0.0 ‑0.1 | 177 | coding (1326/1812 nt) | uidA | beta‑D‑glucuronidase |
| * | NC_000913 | 3,269,335 | 0 | C→A | 100.0% | 0.8 | 1 | Y307* (TAC→TAA) | yhaC | pentapetide repeats‑related protein |
| * | NC_000913 | 3,361,107 | 0 | C→A | 100.0% | 0.8 | 1 | intergenic (+491/‑69) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| * | NC_000913 | 1,469,592 | 0 | G→T | 100.0% | 0.7 | 1 | A79S (GCG→TCG) | insI1 | IS30 transposase |
| * | NC_000913 | 4,507,748 | 0 | C→A | 100.0% | 0.7 | 1 | L290L (CTG→CTT) | insI1 | IS30 transposase |
| * | NC_000913 | 20,086 | 0 | C→T | 100.0% | 0.6 | 2 | E77K (GAA→AAA) | insB1 | IS1 transposase B |
| * | NC_000913 | 84,094 | 0 | C→G | 100.0% | 0.6 | 1 | intergenic (‑386/‑274) | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | NC_000913 | 84,105 | 0 | C→G | 100.0% | 0.6 | 1 | intergenic (‑397/‑263) | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | NC_000913 | 84,107 | 0 | T→G | 100.0% | 0.6 | 1 | intergenic (‑399/‑261) | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | NC_000913 | 3,361,043 | 0 | A→C | 100.0% | 0.6 | 1 | intergenic (+427/‑133) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| * | NC_000913 | 4,137,439 | 2 | .→C | 1.2% | 0.6 0.0 ‑0.0 | 167 | coding (219/618 nt) | yijF | DUF1287 family protein |
| * | NC_000913 | 625,630 | 1 | .→G | 1.2% | 0.5 0.0 ‑0.0 | 171 | coding (746/1176 nt) | entC | isochorismate synthase 1 |
| * | NC_000913 | 4,167,926 | 0 | G→C | 100.0% | 0.5 | 1 | noncoding (1268/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon |
| * | NC_000913 | 4,414,991 | 1 | .→G | 1.1% | 0.5 0.0 ‑0.1 | 182 | coding (717/1626 nt) | aidB | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| * | NC_000913 | 3,619,554 | 0 | G→T | 100.0% | 0.4 | 3 | L121L (CTG→CTT) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,507,749 | 0 | A→C | 100.0% | 0.4 | 1 | L290R (CTG→CGG) | insI1 | IS30 transposase |
| * | NC_000913 | 1,651,266 | 0 | C→G | 100.0% | 0.3 | 1 | pseudogene (422/693 nt) | insD1 | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| * | NC_000913 | 2,726,604 | 0 | C→A | 100.0% | ‑0.1 | 1 | noncoding (2581/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |