mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 34.5% | 25.8 / 17.3 | 29 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 22.2% | 59.7 / 10.0 | 38 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 73 (1.200) | 12 (0.200) | 10/554 | 4.8 | 14.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 73 (1.240) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2900306 = | 90 (1.470) | 6 (0.100) | 6/540 | 6.3 | 6.7% | intergenic (‑33/‑286) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913 | 2900346 = | 83 (1.440) | intergenic (‑73/‑246) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | = 4542690 | 71 (1.160) | 6 (0.100) | 6/554 | 6.4 | 7.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 73 (1.240) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2735442 | 57 (0.930) | 4 (0.070) | 4/556 | 7.5 | 6.4% | coding (570/981 nt) | rluD | 23S rRNA pseudouridine(1911,1915,1917) synthase |
| ? | NC_000913 | = 2735485 | 61 (1.030) | coding (527/981 nt) | rluD | 23S rRNA pseudouridine(1911,1915,1917) synthase | |||||
| * | ? | NC_000913 | = 675659 | 45 (0.740) | 4 (0.070) | 4/558 | 7.6 | 8.3% | coding (889/978 nt) | ybeQ | Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 675664 | 45 (0.760) | coding (884/978 nt) | ybeQ | Sel1 family TPR‑like repeat protein | |||||
| * | ? | NC_000913 | 1570598 = | 66 (1.080) | 3 (0.050) +CCGTTACCGTTAAAC |
3/542 | 8.0 | 5.1% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666176 = | 53 (0.870) | intergenic (‑366/+4) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | = 504159 | 64 (1.050) | 3 (0.050) | 3/560 | 8.2 | 4.9% | coding (538/1221 nt) | fsr | putative fosmidomycin efflux system protein |
| ? | NC_000913 | = 504222 | 53 (0.890) | coding (475/1221 nt) | fsr | putative fosmidomycin efflux system protein | |||||