mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 1,544,782 | 0 | G→. | 100.0% | 8.8 | 2 | pseudogene (933/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein |
| * | NC_000913 | 331,807 | 0 | T→A | 100.0% | 7.8 | 2 | intergenic (+311/‑564) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| * | NC_000913 | 2,785,196 | 1 | .→A | 100.0% | 2.4 | 4 | intergenic (‑185/+566) | ypjC/ileY | pseudogene/tRNA‑Ile |
| * | NC_000913 | 3,919,360 | 1 | .→A | 1.2% | 2.3 0.0 ‑0.5 | 172 | coding (498/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| * | NC_000913 | 3,055,232 | 1 | .→A | 1.2% | 2.2 0.0 ‑0.5 | 171 | coding (213/579 nt) | ygfB | UPF0149 family protein |
| * | NC_000913 | 3,990,292 | 1 | .→T | 1.1% | 2.2 0.0 ‑0.1 | 182 | coding (475/942 nt) | hemC | hydroxymethylbilane synthase |
| * | NC_000913 | 3,958,964 | 1 | .→A | 1.2% | 2.1 0.0 ‑0.4 | 171 | coding (995/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding |
| * | NC_000913 | 163,526 | 1 | .→C | 1.2% | 2.0 0.0 ‑0.4 | 173 | coding (1422/2430 nt) | hrpB | putative ATP‑dependent helicase |
| * | NC_000913 | 3,420,157 | 1 | .→A | 1.2% | 2.0 0.0 ‑0.4 | 170 | coding (24/1182 nt) | yhdX | putative amino acid ABC transporter permease |
| * | NC_000913 | 3,709,058 | 2 | .→G | 1.2% | 2.0 0.0 ‑0.5 | 172 | coding (1418/1692 nt) | eptB | KDO phosphoethanolamine transferase, Ca(2+)‑inducible |
| * | NC_000913 | 2,886,085 | 1 | .→C | 1.2% | 1.8 0.0 ‑0.5 | 167 | coding (1135/2667 nt) | ygcB | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| * | NC_000913 | 2,903,738 | 0 | T→G | 100.0% | 1.8 | 1 | intergenic (+364/+1009) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,831,505 | 1 | .→C | 1.2% | 1.8 0.0 ‑0.6 | 169 | coding (1049/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| * | NC_000913 | 4,365,575 | 1 | .→G | 1.2% | 1.8 0.0 ‑0.1 | 167 | coding (1199/1302 nt) | dcuA | C4‑dicarboxylate antiporter |
| * | NC_000913 | 163,526 | 2 | .→G | 1.2% | 1.7 0.0 ‑0.1 | 173 | coding (1422/2430 nt) | hrpB | putative ATP‑dependent helicase |
| * | NC_000913 | 3,795,813 | 1 | .→C | 1.0% | 1.7 0.0 ‑0.5 | 192 | coding (885/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| * | NC_000913 | 3,709,058 | 1 | .→C | 1.2% | 1.6 0.0 ‑0.3 | 172 | coding (1418/1692 nt) | eptB | KDO phosphoethanolamine transferase, Ca(2+)‑inducible |
| * | NC_000913 | 3,538,515 | 1 | .→C | 1.2% | 1.5 0.0 ‑0.1 | 169 | coding (1131/2322 nt) | yhgF | putative transcriptional accessory protein |
| * | NC_000913 | 3,438,859 | 1 | .→G | 1.1% | 1.4 0.0 ‑0.1 | 175 | coding (272/426 nt) | zntR | zntA gene transcriptional activator |
| * | NC_000913 | 3,958,964 | 2 | .→G | 1.2% | 1.4 0.0 ‑0.2 | 171 | coding (995/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding |
| * | NC_000913 | 3,990,292 | 2 | .→T | 1.1% | 1.3 0.0 ‑0.1 | 182 | coding (475/942 nt) | hemC | hydroxymethylbilane synthase |
| * | NC_000913 | 752,925 | 0 | T→C | 100.0% | 1.2 | 1 | intergenic (‑130/+260) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 3,185,339 | 0 | T→G | 100.0% | 1.2 | 1 | intergenic (+209/‑75) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,287,260 | 0 | G→T | 100.0% | 0.9 | 1 | intergenic (+235/‑166) | agaI/yraH | galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 752,904 | 0 | T→A | 100.0% | 0.8 | 1 | intergenic (‑109/+281) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 752,906 | 0 | C→A | 100.0% | 0.8 | 1 | intergenic (‑111/+279) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 752,916 | 0 | T→A | 100.0% | 0.8 | 1 | intergenic (‑121/+269) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 2,903,754 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (+380/+993) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 2,903,755 | 0 | G→A | 100.0% | 0.8 | 1 | intergenic (+381/+992) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 2,903,784 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (+410/+963) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,185,297 | 0 | G→T | 100.0% | 0.8 | 1 | intergenic (+167/‑117) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,185,332 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (+202/‑82) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 3,438,859 | 3 | .→A | 1.1% | 0.8 0.0 ‑0.0 | 175 | coding (272/426 nt) | zntR | zntA gene transcriptional activator |
| * | NC_000913 | 3,621,370 | 0 | A→C | 100.0% | 0.8 | 1 | T727P (ACA→CCA) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 227,278 | 0 | T→G | 100.0% | 0.7 | 1 | noncoding (1520/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 3,185,321 | 0 | C→A | 100.0% | 0.7 | 1 | intergenic (+191/‑93) | yqiC/ygiL | BMFP family putative fusogenic protein/putative fimbrial‑like adhesin protein |
| * | NC_000913 | 2,903,758 | 0 | T→G | 100.0% | 0.6 | 1 | intergenic (+384/+989) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 2,903,775 | 0 | T→G | 100.0% | 0.6 | 1 | intergenic (+401/+972) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 2,785,125 | 0 | G→A | 100.0% | 0.5 | 4 | intergenic (‑114/+637) | ypjC/ileY | pseudogene/tRNA‑Ile |
| * | NC_000913 | 3,438,859 | 2 | .→C | 1.1% | 0.4 0.0 ‑0.0 | 175 | coding (272/426 nt) | zntR | zntA gene transcriptional activator |
| * | NC_000913 | 1,954,699 | 1 | .→C | 1.1% | 0.2 0.0 ‑0.0 | 178 | coding (2309/2430 nt) | torZ | trimethylamine N‑oxide reductase system III, catalytic subunit |