mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 41 (0.510) | 10 (0.130) | 10/536 | 6.8 | 17.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 57 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 65 (0.820) | 17 (0.300) | 6/408 | 6.8 | 30.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 30 (0.520) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 40 (0.500) | 9 (0.120) | 9/536 | 7.2 | 16.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 57 (0.760) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 127 (1.590) | 7 (0.090) | 7/550 | 8.4 | 6.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 97 (1.260) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 726314 | 92 (1.160) | 6 (0.080) | 6/562 | 9.0 | 6.0% | coding (723/2049 nt) | kdpB | potassium translocating ATPase, subunit B |
| ? | NC_000913 | = 726329 | 96 (1.220) | coding (708/2049 nt) | kdpB | potassium translocating ATPase, subunit B | |||||
| * | ? | NC_000913 | 2700550 = | 90 (1.130) | 5 (0.070) | 5/530 | 9.2 | 6.0% | intergenic (‑353/+68) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 |
| ? | NC_000913 | 2700601 = | 73 (0.980) | intergenic (‑404/+17) | shoB/acpS | toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | = 2316849 | 74 (0.930) | 5 (0.070) | 5/544 | 9.4 | 6.6% | noncoding (16/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2316857 | 71 (0.930) | noncoding (24/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1376200 = | 93 (1.170) | 5 (0.060) | 5/554 | 9.5 | 5.2% | coding (167/789 nt) | ycjR | putative TIM alpha/beta barrel enzyme |
| ? | NC_000913 | 1376216 = | 91 (1.170) | coding (183/789 nt) | ycjR | putative TIM alpha/beta barrel enzyme | |||||
| * | ? | NC_000913 | 1243134 = | 71 (0.890) | 6 (0.080) | 5/554 | 9.5 | 7.9% | intergenic (‑54/‑46) | ldcA/emtA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A/lytic murein endotransglycosylase E |
| ? | NC_000913 | 1243154 = | 70 (0.900) | intergenic (‑74/‑26) | ldcA/emtA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A/lytic murein endotransglycosylase E | |||||
| * | ? | NC_000913 | 2751057 = | 69 (0.870) | 4 (0.050) | 4/550 | 10.1 | 5.8% | coding (227/879 nt) | nadK | NAD kinase |
| ? | NC_000913 | 2751163 = | 64 (0.830) | coding (333/879 nt) | nadK | NAD kinase | |||||