mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 28.6% | 35.3 / 18.1 | 42 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.0% | 64.0 / 26.3 | 53 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 21.4% | 49.9 / 15.3 | 42 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2714283 = | NA (NA) | 7 (0.070) | 7/558 | 10.6 | NA | noncoding (1/98 nt) | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 2714308 = | NA (NA) | noncoding (26/98 nt) | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 624176 = | 75 (0.770) | 6 (0.060) | 6/554 | 11.1 | 7.8% | coding (335/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein |
| ? | NC_000913 | 624218 = | 69 (0.730) | coding (293/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3267226 | 110 (1.130) | 5 (0.050) | 5/554 | 11.7 | 4.5% | intergenic (‑161/‑154) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| ? | NC_000913 | = 3267234 | 108 (1.140) | intergenic (‑169/‑146) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein | |||||
| * | ? | NC_000913 | = 4459355 | 117 (1.200) | 5 (0.050) | 5/560 | 11.8 | 4.3% | intergenic (+44/‑135) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459469 | 109 (1.140) | intergenic (+158/‑21) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | NC_000913 | 2436763 = | 83 (0.850) | 4 (0.040) | 4/562 | 12.5 | 4.5% | coding (1089/1137 nt) | pdxB | erythronate‑4‑phosphate dehydrogenase |
| ? | NC_000913 | 2436785 = | 87 (0.910) | coding (1067/1137 nt) | pdxB | erythronate‑4‑phosphate dehydrogenase | |||||
| * | ? | NC_000913 | 2292787 = | 105 (1.080) | 3 (0.030) | 3/556 | 13.2 | 3.0% | coding (178/558 nt) | dsbE | periplasmic thioredoxin of cytochrome c‑type biogenesis |
| ? | NC_000913 | 2292985 = | 94 (0.990) | coding (1920/1944 nt) | ccmF | heme lyase, CcmF subunit | |||||
| * | ? | NC_000913 | 1279383 = | 136 (1.390) | 3 (0.030) | 3/562 | 13.3 | 2.2% | intergenic (+35/‑481) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279448 = | 128 (1.330) | intergenic (+100/‑416) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||