mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.7% | 99.9 / 51.1 | 76 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 25.0% | 63.3 / 33.4 | 68 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 24.1% | 148.1 / 40.6 | 83 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 23.9% | 62.3 / 32.3 | 68 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 526,796 | 0 | C | G | 21.4% | 344.4 / 72.1 | 131 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,800 | 0 | A | G | 20.9% | 289.8 / 53.8 | 129 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 526,792 | 0 | A | C | 20.4% | 290.1 / 64.6 | 132 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 107 (0.910) | 45 (0.520) | 15/440 | 7.4 | 37.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 73 (0.850) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1207805 | 102 (0.870) | 22 (0.200) | 19/568 | 8.4 | 19.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 87 (0.780) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 105 (0.890) | 14 (0.130) | 12/568 | 11.1 | 12.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 90 (0.810) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 534223 = | 106 (0.900) | 6 (0.050) | 6/586 | 14.8 | 5.9% | coding (308/1782 nt) | gcl | glyoxylate carboligase |
| ? | NC_000913 | 534336 = | 88 (0.770) | coding (421/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | NC_000913 | 2765420 = | 100 (0.850) | 4 (0.040) | 4/512 | 14.9 | 4.5% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 84 (0.840) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1803988 | 122 (1.040) | 4 (0.030) | 4/584 | 16.3 | 3.4% | pseudogene (471/1476 nt) | arpB | pseudogene, ankyrin repeats |
| ? | NC_000913 | = 1804099 | 110 (0.960) | pseudogene (582/1476 nt) | arpB | pseudogene, ankyrin repeats | |||||