mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 47.1% | 7.3 / 43.1 | 37 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 38.9% | 29.9 / 28.8 | 37 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,304 | 0 | A | C | 25.7% | 47.4 / 16.2 | 35 | intergenic (+510/+132) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 23.9% | 42.9 / 13.3 | 46 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,303 | 0 | A | G | 22.9% | 52.4 / 12.7 | 35 | intergenic (+509/+133) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 56 (0.960) | 12 (0.210) | 11/580 | 4.8 | 18.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 49 (0.860) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 53 (0.910) | 7 (0.120) | 7/580 | 6.4 | 12.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 49 (0.860) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2470471 = | 48 (0.820) | 5 (0.090) | 5/580 | 7.4 | 9.9% | intergenic (+9/‑344) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| ? | NC_000913 | 2470493 = | 44 (0.780) | intergenic (+31/‑322) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 18671 = | 65 (1.110) | 4 (0.070) | 4/584 | 8.0 | 5.9% | intergenic (+16/‑44) | nhaA/nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| ? | NC_000913 | 18691 = | 65 (1.140) | intergenic (+36/‑24) | nhaA/nhaR | sodium‑proton antiporter/transcriptional activator of nhaA | |||||
| * | ? | NC_000913 | 1599979 = | 54 (0.920) | 4 (0.070) | 4/588 | 8.1 | 7.1% | coding (231/1593 nt) | lsrK | autoinducer‑2 (AI‑2) kinase |
| ? | NC_000913 | 1600016 = | 52 (0.900) | coding (194/1593 nt) | lsrK | autoinducer‑2 (AI‑2) kinase | |||||
| * | ? | NC_000913 | 1287074 = | 51 (0.870) | 3 (0.050) | 3/578 | 8.6 | 5.6% | intergenic (+548/+13) | narI/tpr | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/protamine‑like protein |
| ? | NC_000913 | 1287185 = | 52 (0.920) | intergenic (‑9/+59) | tpr/tyrV | protamine‑like protein/tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 1152249 | 72 (1.230) | 4 (0.070) | 3/588 | 8.7 | 5.5% | coding (311/1242 nt) | fabF | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| ? | NC_000913 | = 1152266 | 68 (1.180) | coding (328/1242 nt) | fabF | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II | |||||
| * | ? | NC_000913 | 1007710 = | 52 (0.890) | 3 (0.050) | 3/586 | 8.7 | 6.0% | intergenic (‑110/‑134) | ycbX/rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent |
| ? | NC_000913 | 1007795 = | 43 (0.750) | intergenic (‑195/‑49) | ycbX/rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent | |||||
| * | ? | NC_000913 | 963481 = | 78 (1.330) | 3 (0.050) | 3/586 | 8.7 | 4.3% | coding (1487/1674 nt) | rpsA | 30S ribosomal subunit protein S1 |
| ? | NC_000913 | 963632 = | 58 (1.010) | coding (1638/1674 nt) | rpsA | 30S ribosomal subunit protein S1 | |||||
| * | ? | NC_000913 | 383888 = | 66 (1.130) | 3 (0.050) | 3/580 | 8.7 | 4.6% | coding (48/1197 nt) | yaiP | putative family 2 glycosyltransferase |
| ? | NC_000913 | 383908 = | 60 (1.060) | coding (28/1197 nt) | yaiP | putative family 2 glycosyltransferase | |||||