mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 4,251,510 | 0 | G→A | 100.0% | 2.6 | 2 | pseudogene (550/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| * | NC_000913 | 2,338,957 | 1 | .→T | 1.0% | 1.9 0.0 ‑0.2 | 191 | coding (464/2628 nt) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 1,431,794 | 1 | .→C | 1.2% | 1.6 0.0 ‑0.4 | 165 | coding (2746/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| * | NC_000913 | 2,010,001 | 1 | .→G | 1.2% | 1.6 0.0 ‑0.2 | 170 | coding (181/669 nt) | yedK | DUF159 family protein |
| * | NC_000913 | 2,010,001 | 2 | .→G | 1.2% | 1.6 0.0 ‑0.2 | 170 | coding (181/669 nt) | yedK | DUF159 family protein |
| * | NC_000913 | 604,246 | 1 | .→C | 1.2% | 1.5 0.0 ‑0.2 | 168 | coding (418/1248 nt) | ybdG | mechanosensitive channel protein, miniconductance |
| * | NC_000913 | 2,147,825 | 1 | .→C | 1.1% | 1.5 0.0 ‑0.4 | 180 | coding (152/1353 nt) | yegD | Hsp70 chaperone family protein |
| * | NC_000913 | 2,975,536 | 1 | .→T | 1.2% | 1.5 0.0 ‑0.0 | 168 | coding (479/2160 nt) | aas | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
| * | NC_000913 | 3,705,423 | 1 | .→C | 1.2% | 1.5 0.0 ‑0.4 | 171 | coding (368/1020 nt) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 2,014,143 | 1 | .→C | 1.1% | 1.4 0.0 ‑0.2 | 175 | coding (915/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein |
| * | NC_000913 | 2,503,804 | 1 | .→G | 1.2% | 1.4 0.0 ‑0.2 | 166 | coding (682/2496 nt) | fryA | putative PTS enzyme: Hpr, enzyme I and IIA components |
| * | NC_000913 | 3,310,417 | 1 | .→C | 1.0% | 1.4 0.0 ‑0.1 | 199 | coding (752/2136 nt) | pnp | polynucleotide phosphorylase/polyadenylase |
| * | NC_000913 | 3,705,530 | 1 | .→G | 1.0% | 1.4 0.0 ‑0.1 | 191 | coding (261/1020 nt) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 4,464,822 | 1 | .→G | 1.2% | 1.4 0.0 ‑0.2 | 163 | coding (1359/1422 nt) | treB | trehalose‑specific PTS enzyme: IIB and IIC component |
| * | NC_000913 | 3,425,055 | 0 | A→C | 100.0% | 1.3 | 1 | noncoding (1729/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,296,582 | 1 | .→G | 1.2% | 1.3 0.0 ‑0.0 | 166 | coding (544/690 nt) | yjcO | Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,424,090 | 2 | .→C | 1.2% | 1.3 0.0 ‑0.0 | 168 | coding (391/687 nt) | ulaF | L‑ribulose 5‑phosphate 4‑epimerase |
| * | NC_000913 | 105,915 | 1 | .→T | 1.2% | 1.2 0.0 ‑0.0 | 168 | coding (611/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| * | NC_000913 | 18,260 | 1 | .→G | 1.1% | 1.0 0.0 ‑0.0 | 174 | coding (772/1167 nt) | nhaA | sodium‑proton antiporter |
| * | NC_000913 | 589,501 | 1 | .→G | 1.2% | 1.0 0.0 ‑0.1 | 165 | coding (1454/2973 nt) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 2,265,125 | 1 | .→A | 1.0% | 1.0 0.0 ‑0.0 | 191 | coding (171/255 nt) | yeiW | UPF0153 cysteine cluster protein |
| * | NC_000913 | 1,958,305 | 0 | A→C | 100.0% | 0.9 | 1 | intergenic (‑173/+215) | torY/cutC | TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein |
| * | NC_000913 | 2,033,958 | 0 | G→T | 100.0% | 0.9 | 1 | intergenic (‑474/‑93) | yedR/yedS | inner membrane protein/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | NC_000913 | 2,033,961 | 0 | C→T | 100.0% | 0.8 | 1 | intergenic (‑477/‑90) | yedR/yedS | inner membrane protein/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | NC_000913 | 4,424,090 | 1 | .→G | 1.2% | 0.8 0.0 ‑0.1 | 168 | coding (391/687 nt) | ulaF | L‑ribulose 5‑phosphate 4‑epimerase |
| * | NC_000913 | 2,033,945 | 0 | C→A | 100.0% | 0.7 | 1 | intergenic (‑461/‑106) | yedR/yedS | inner membrane protein/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | NC_000913 | 3,267,490 | 0 | A→C | 100.0% | 0.6 | 1 | Q37H (CAA→CAC) | tdcR | L‑threonine dehydratase operon activator protein |
| * | NC_000913 | 3,425,007 | 0 | A→C | 100.0% | 0.5 | 1 | noncoding (1777/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,621,369 | 0 | G→A | 100.0% | 0.5 | 1 | L726L (CTG→CTA) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,621,376 | 0 | A→C | 100.0% | 0.4 | 1 | I729L (ATC→CTC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 4,039,019 | 0 | A→C | 100.0% | 0.4 | 1 | noncoding (1501/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,039,021 | 0 | A→C | 100.0% | 0.4 | 1 | noncoding (1503/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 3,622,006 | 0 | T→G | 100.0% | 0.2 | 2 | Y939D (TAT→GAT) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 2,884,398 | 0 | A→C | 100.0% | 0.0 | 2 | intergenic (‑260/+155) | casA/ygcB | CRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| * | NC_000913 | 1,094,538 | 0 | A→C | 100.0% | ‑0.1 | 2 | S202A (TCA→GCA) | insF1 | IS3 transposase B |