mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 24.3% | 46.0 / 13.2 | 40 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.7% | 76.8 / 22.2 | 46 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 20.0% | 51.4 / 13.4 | 40 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 49 (0.700) | 19 (0.380) | 6/400 | 6.8 | 33.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 41 (0.820) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 46 (0.660) | 7 (0.110) | 7/528 | 8.1 | 11.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 60 (0.910) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 52 (0.740) | 8 (0.120) | 6/528 | 8.6 | 12.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 60 (0.910) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4257191 | 54 (0.770) | 7 (0.100) | 6/552 | 8.9 | 10.7% | coding (77/609 nt) | lexA | transcriptional repressor of SOS regulon |
| ? | NC_000913 | = 4257273 | 64 (0.920) | coding (159/609 nt) | lexA | transcriptional repressor of SOS regulon | |||||
| * | ? | NC_000913 | = 3667761 | 90 (1.280) | 6 (0.090) | 6/546 | 8.9 | 6.6% | intergenic (‑181/+30) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| ? | NC_000913 | = 3667775 | 82 (1.200) | intergenic (‑195/+16) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase | |||||
| * | ? | NC_000913 | = 292301 | 60 (0.850) | 5 (0.070) | 5/540 | 9.4 | 8.0% | intergenic (+70/+21) | yagJ/yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| ? | NC_000913 | = 292302 | 57 (0.840) | intergenic (+71/+20) | yagJ/yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein | |||||
| * | ? | NC_000913 | 151509 = | 64 (0.910) | 6 (0.090) | 5/540 | 9.4 | 8.9% | coding (91/597 nt) | yadK | putative fimbrial‑like adhesin protein |
| ? | NC_000913 | 151533 = | 61 (0.900) | coding (67/597 nt) | yadK | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | 1205157 = | 74 (1.050) | 5 (0.070) | 5/548 | 9.5 | 6.4% | pseudogene (754/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| ? | NC_000913 | 1205226 = | 75 (1.090) | pseudogene (823/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3186096 = | NA (NA) | 5 (0.070) | 5/560 | 9.6 | 5.7% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3634061 | 82 (1.170) | pseudogene (398/1194 nt) | yhiL | pseudogene, DUF4049 family protein | |||||
| * | ? | NC_000913 | 2920332 = | 60 (0.850) | 4 (0.060) | 4/546 | 10.1 | 5.6% | coding (415/1341 nt) | gudX | glucarate dehydratase‑related protein, substrate unknown |
| ? | NC_000913 | 2920445 = | 77 (1.120) | coding (302/1341 nt) | gudX | glucarate dehydratase‑related protein, substrate unknown | |||||