mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 133 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,678,039 | 0 | T | G | 57.5% | 28.1 / 48.7 | 40 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 3,943,488 | 0 | T | G | 57.1% | 1.0 / 10.7 | 15 | noncoding (54/76 nt) | gltU | tRNA‑Glu |
| * | NC_000913 | 4,043,030 | 0 | A | G | 52.6% | 15.5 / 24.4 | 19 | N206D (AAT→GAT) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 1,097,581 | 0 | A | G | 51.7% | 35.2 / 43.6 | 29 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 4,336,901 | 0 | T | A | 51.7% | 18.3 / 42.6 | 30 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 2,678,048 | 0 | A | C | 50.0% | 26.9 / 15.0 | 40 | V105G (GTG→GGG) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 49.0% | 53.0 / 22.2 | 51 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,397,830 | 0 | T | C | 48.8% | 30.6 / 13.1 | 43 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,079,468 | 0 | A | G | 46.9% | 33.6 / 10.3 | 32 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 1,825,061 | 0 | G | A | 46.5% | 33.6 / 31.5 | 44 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,222,233 | 0 | G | A | 46.4% | 17.0 / 12.9 | 28 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 2,678,043 | 0 | C | T | 46.3% | 26.5 / 18.6 | 41 | E107K (GAA→AAA) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 941,713 | 0 | T | G | 45.2% | 49.6 / 14.0 | 42 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 1,397,823 | 0 | A | C | 45.2% | 41.3 / 10.1 | 42 | V267G (GTT→GGT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,510,395 | 0 | C | A | 44.4% | 33.4 / 25.9 | 36 | S131R (AGC→AGA) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| * | NC_000913 | 3,423,294 | 0 | T | C | 44.4% | 39.6 / 12.6 | 36 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.6% | 34.2 / 26.9 | 39 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 345,328 | 0 | C | A | 43.5% | 80.1 / 37.8 | 62 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 345,304 | 0 | G | A | 43.3% | 74.0 / 35.4 | 60 | intergenic (+313/‑100) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 3,998,178 | 0 | G | A | 43.3% | 30.9 / 16.9 | 30 | A66T (GCG→ACG) | uvrD | DNA‑dependent ATPase I and helicase II |