mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 174 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 55.6% | 18.4 / 36.0 | 27 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 599,576 | 0 | T | G | 52.0% | 51.9 / 78.7 | 50 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 1,755,871 | 0 | T | A | 51.2% | 28.9 / 65.5 | 41 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 357,890 | 0 | C | A | 50.0% | 10.3 / 12.7 | 24 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 46.5% | 33.4 / 23.2 | 43 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 29,496 | 0 | T | A | 46.2% | 53.5 / 29.6 | 52 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 357,875 | 0 | A | T | 44.8% | 29.5 / 13.0 | 29 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,147,733 | 0 | T | G | 44.4% | 90.0 / 13.5 | 54 | G20G (GGT→GGG) | yegD | Hsp70 chaperone family protein |
| * | NC_000913 | 1,825,056 | 0 | G | A | 44.0% | 63.5 / 24.3 | 50 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,755,862 | 0 | C | A | 43.6% | 47.2 / 24.1 | 39 | S55R (AGC→AGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 4,604,350 | 0 | C | T | 43.5% | 48.1 / 20.6 | 46 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 4,457,105 | 0 | A | G | 43.2% | 58.3 / 12.7 | 45 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 1,413,735 | 0 | A | T | 43.1% | 57.8 / 32.5 | 51 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 4,056,115 | 0 | A | C | 42.6% | 81.1 / 18.1 | 55 | G75G (GGT→GGG) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| * | NC_000913 | 3,005,978 | 0 | C | A | 42.5% | 84.3 / 15.7 | 48 | intergenic (‑192/‑284) | ygeV/ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| * | NC_000913 | 4,287,719 | 0 | T | A | 42.5% | 63.8 / 22.7 | 47 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| * | NC_000913 | 2,903,692 | 0 | C | A | 41.8% | 84.3 / 27.6 | 55 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 1,174,626 | 0 | G | A | 41.5% | 47.0 / 15.8 | 41 | F180F (TTC→TTT) | ycfT | inner membrane protein |
| * | NC_000913 | 354,288 | 0 | T | G | 41.3% | 80.5 / 13.9 | 47 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 3,133,302 | 0 | T | G | 41.1% | 98.1 / 13.9 | 56 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |