mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 346 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 50.8% | 44.9 / 96.4 | 61 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 436,504 | 0 | A | C | 49.1% | 58.7 / 19.9 | 53 | T291P (ACC→CCC) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 15,410 | 0 | T | G | 47.3% | 74.9 / 16.3 | 58 | intergenic (+112/‑35) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 3,133,302 | 0 | T | G | 46.8% | 99.8 / 12.7 | 63 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |
| * | NC_000913 | 2,984,441 | 0 | A | C | 46.4% | 99.4 / 10.9 | 57 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 29,486 | 0 | C | A | 45.7% | 103.5 / 37.9 | 70 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 45.6% | 52.2 / 29.3 | 57 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 5,159 | 0 | G | A | 45.2% | 63.8 / 37.0 | 62 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 15,382 | 0 | A | G | 45.1% | 85.4 / 25.2 | 71 | intergenic (+84/‑63) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 907,602 | 0 | A | C | 45.0% | 84.4 / 13.1 | 60 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 44.6% | 96.7 / 13.8 | 56 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,903,692 | 0 | C | A | 44.4% | 90.8 / 36.6 | 63 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.3% | 88.2 / 19.4 | 64 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 436,516 | 0 | C | A | 44.2% | 59.2 / 21.4 | 52 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 354,288 | 0 | T | G | 43.9% | 108.6 / 20.3 | 66 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 589,934 | 0 | T | G | 43.5% | 78.8 / 17.8 | 46 | T341P (ACC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | NC_000913 | 2,040,075 | 0 | C | G | 42.6% | 85.6 / 20.5 | 62 | L200V (CTG→GTG) | yedY | membrane‑anchored, periplasmic TMAO, DMSO reductase |
| * | NC_000913 | 3,333,757 | 0 | T | G | 42.6% | 114.6 / 13.1 | 61 | G16G (GGT→GGG) | ispB | octaprenyl diphosphate synthase |
| * | NC_000913 | 357,890 | 0 | C | A | 42.5% | 37.0 / 18.9 | 40 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,969,794 | 0 | A | C | 42.5% | 62.1 / 15.7 | 41 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 98593 = | 69 (1.070) | 3 (0.050) | 3/278 | 12.0 | 5.7% | coding (191/1245 nt) | ftsW | putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer |
| ? | NC_000913 | = 4320589 | 35 (0.580) | coding (75/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||