mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 329 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,880 | 0 | T | C | 53.8% | 27.4 / 56.2 | 40 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 354,288 | 0 | T | G | 51.8% | 70.0 / 101.1 | 56 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 941,713 | 0 | T | G | 48.5% | 89.2 / 21.8 | 66 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 599,576 | 0 | T | G | 48.3% | 87.0 / 18.5 | 60 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 1,535,785 | 0 | A | G | 45.3% | 74.8 / 14.3 | 53 | F25S (TTC→TCC) | yddE | PhzC‑PhzF family protein |
| * | NC_000913 | 1,825,056 | 0 | G | A | 44.4% | 67.0 / 26.5 | 54 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 1,755,871 | 0 | T | A | 44.3% | 74.5 / 43.1 | 61 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,097,581 | 0 | A | G | 44.1% | 100.3 / 16.4 | 60 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 357,890 | 0 | C | A | 43.9% | 32.0 / 19.3 | 41 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 43.8% | 49.0 / 25.6 | 48 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,717,014 | 0 | T | G | 43.2% | 71.9 / 13.0 | 45 | G156G (GGT→GGG) | yiaD | multicopy suppressor of bamB; outer membrane lipoprotein |
| * | NC_000913 | 3,947,850 | 0 | C | T | 43.1% | 58.0 / 30.2 | 51 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 231,694 | 0 | C | T | 42.6% | 74.3 / 20.9 | 54 | F191F (TTC→TTT) | yafD | endo/exonuclease/phosphatase family protein |
| * | NC_000913 | 2,368,558 | 0 | G | A | 42.5% | 56.4 / 12.8 | 40 | E174K (GAA→AAA) | arnA | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| * | NC_000913 | 4,238,049 | 0 | A | G | 41.8% | 77.3 / 18.1 | 55 | E139G (GAA→GGA) | yjbH | DUF940 family extracellular polysaccharide protein |
| * | NC_000913 | 2,984,441 | 0 | A | C | 41.5% | 108.0 / 26.5 | 65 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 357,875 | 0 | A | T | 41.5% | 43.7 / 15.1 | 41 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,624,517 | 0 | G | T | 41.4% | 75.5 / 26.6 | 58 | E492* (GAA→TAA) | ppk | polyphosphate kinase, component of RNA degradosome |
| * | NC_000913 | 366,526 | 0 | T | G | 41.3% | 113.0 / 17.0 | 63 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 1,413,735 | 0 | A | T | 40.9% | 59.2 / 26.6 | 44 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |