mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 442 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 67.6% | 6.0 / 35.2 | 37 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 60.5% | 16.3 / 41.7 | 38 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,873 | 0 | C | T | 50.0% | 21.1 / 26.2 | 40 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,875 | 0 | A | T | 50.0% | 38.6 / 14.8 | 40 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 786,855 | 0 | A | C | 48.3% | 87.8 / 14.3 | 60 | G247G (GGT→GGG) | gpmA | phosphoglyceromutase 1 |
| * | NC_000913 | 436,516 | 0 | C | A | 48.2% | 72.4 / 31.1 | 56 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 47.6% | 29.7 / 22.7 | 42 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 366,526 | 0 | T | G | 47.1% | 70.8 / 18.9 | 51 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 803,869 | 0 | G | T | 46.7% | 63.4 / 24.1 | 45 | V123L (GTG→TTG) | ybhJ | aconitase family protein |
| * | NC_000913 | 3,001,164 | 0 | A | C | 46.3% | 53.4 / 13.7 | 41 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 1,356,201 | 0 | T | G | 46.2% | 112.0 / 12.5 | 65 | T304P (ACC→CCC) | sapA | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,864,099 | 0 | C | A | 45.8% | 61.2 / 22.4 | 48 | R67R (CGC→CGA) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator |
| * | NC_000913 | 599,576 | 0 | T | G | 45.6% | 79.3 / 22.3 | 57 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 987,494 | 0 | T | G | 45.6% | 88.2 / 17.1 | 57 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| * | NC_000913 | 40,515 | 0 | G | T | 45.3% | 63.5 / 29.9 | 54 | Q473K (CAA→AAA) | caiT | putative transporter |
| * | NC_000913 | 941,713 | 0 | T | G | 45.2% | 89.2 / 26.4 | 62 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 345,328 | 0 | C | A | 44.1% | 96.4 / 43.9 | 68 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 1,222,596 | 0 | G | A | 44.1% | 52.4 / 45.2 | 59 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 3,423,294 | 0 | T | C | 43.5% | 82.8 / 18.2 | 62 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,604,237 | 0 | C | T | 43.4% | 52.7 / 24.0 | 53 | S64L (TCG→TTG) | lsrD | autoinducer 2 import system permease protein |