mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 606 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 941,713 | 0 | T | G | 55.4% | 50.0 / 99.1 | 65 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 357,890 | 0 | C | A | 52.8% | 15.3 / 57.4 | 36 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,350,853 | 0 | A | C | 51.8% | 65.8 / 88.7 | 57 | S725A (TCA→GCA) | arcB | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| * | NC_000913 | 1,969,794 | 0 | A | C | 48.3% | 85.1 / 14.5 | 61 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 802,118 | 0 | A | C | 47.8% | 86.1 / 13.9 | 67 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 1,376,505 | 0 | A | C | 47.5% | 85.9 / 29.6 | 61 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,443,277 | 0 | A | C | 47.0% | 76.7 / 35.2 | 66 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 1,079,468 | 0 | A | G | 46.9% | 88.7 / 19.2 | 64 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 3,105,499 | 0 | A | C | 46.6% | 114.6 / 12.7 | 73 | Y356S (TAC→TCC) | mltC | membrane‑bound lytic murein transglycosylase C |
| * | NC_000913 | 357,880 | 0 | T | C | 46.0% | 34.3 / 13.3 | 37 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,508,657 | 0 | A | G | 45.8% | 83.2 / 16.3 | 60 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,678,039 | 0 | T | G | 45.3% | 104.6 / 16.3 | 64 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 357,873 | 0 | C | T | 45.2% | 36.8 / 22.1 | 42 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 523,326 | 0 | T | G | 45.2% | 86.7 / 12.8 | 62 | G22G (GGT→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 599,576 | 0 | T | G | 45.2% | 90.1 / 28.8 | 62 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 357,875 | 0 | A | T | 45.0% | 45.8 / 17.7 | 41 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,508,662 | 0 | T | A | 44.1% | 91.9 / 22.4 | 60 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,571,036 | 0 | T | G | 43.5% | 112.4 / 13.7 | 69 | N239T (AAC→ACC) | eutE | aldehyde oxidoreductase, ethanolamine utilization protein |
| * | NC_000913 | 3,812,792 | 0 | C | A | 43.3% | 90.3 / 31.7 | 60 | T21N (ACC→AAC) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 1,776,263 | 0 | T | G | 43.2% | 123.1 / 19.8 | 75 | V226G (GTG→GGG) | ydiF | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |