mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 571 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 55.6% | 16.4 / 60.6 | 45 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 42.6 / 18.0 | 46 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,585,086 | 0 | A | C | 50.0% | 71.0 / 27.9 | 60 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 49.1% | 39.9 / 43.9 | 57 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,079,468 | 0 | A | G | 47.5% | 74.3 / 19.5 | 60 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 1,079,460 | 0 | T | G | 46.6% | 83.0 / 12.6 | 58 | G52G (GGT→GGG) | putP | proline:sodium symporter |
| * | NC_000913 | 1,621,118 | 0 | A | C | 45.5% | 74.6 / 12.6 | 56 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 231,694 | 0 | C | T | 45.2% | 72.0 / 29.6 | 62 | F191F (TTC→TTT) | yafD | endo/exonuclease/phosphatase family protein |
| * | NC_000913 | 357,875 | 0 | A | T | 44.9% | 67.1 / 18.7 | 49 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 925,900 | 0 | A | G | 44.8% | 88.3 / 18.1 | 58 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 1,222,596 | 0 | G | A | 44.4% | 49.9 / 39.6 | 54 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 501,575 | 0 | A | C | 44.0% | 133.6 / 18.7 | 77 | V555G (GTG→GGG) | ybaL | inner membrane putative NAD(P)‑binding transporter |
| * | NC_000913 | 1,376,505 | 0 | A | C | 44.0% | 67.5 / 20.3 | 50 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,984,441 | 0 | A | C | 43.9% | 86.5 / 17.1 | 57 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 4,457,105 | 0 | A | G | 43.5% | 79.4 / 22.9 | 62 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 2,678,039 | 0 | T | G | 43.1% | 82.8 / 11.3 | 51 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 15,395 | 0 | G | A | 42.9% | 84.0 / 34.2 | 70 | intergenic (+97/‑50) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 1,489,174 | 0 | G | T | 42.9% | 101.3 / 26.0 | 64 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 1,684,712 | 0 | A | C | 42.9% | 88.2 / 15.1 | 56 | T152P (ACC→CCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 689,514 | 0 | A | C | 42.6% | 89.9 / 14.5 | 55 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 103 (1.390) | 4 (0.060) | 4/280 | 12.5 | 3.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 115 (1.660) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||