mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 566,173 | 0 | C | G | 58.5% | 44.6 / 100.6 | 65 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 56.7% | 35.1 / 81.4 | 67 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,245 | 0 | G | A | 49.0% | 7.3 / 69.4 | 51 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,024,139 | 0 | T | C | 42.5% | 12.0 / 57.7 | 47 | F58L (TTC→CTC) | rcsA | transcriptional regulator of colanic acid capsular biosynthesis |
| * | NC_000913 | 566,277 | 0 | C | T | 39.2% | 44.9 / 53.7 | 51 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3160836 = | 34 (1.090) | 3 (0.100) | 3/208 | 3.1 | 7.7% | coding (311/2220 nt) | ygiQ | Radical SAM superfamily protein |
| ? | NC_000913 | 3160864 = | 39 (1.300) | coding (283/2220 nt) | ygiQ | Radical SAM superfamily protein | |||||