mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.2 revision caddc01d3be9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 643,952 | C→G | M19I (ATG→ATC) | acoB ← | acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit beta |
| RA | 1,851,994 | G→T | E346D (GAG→GAT) | relA → | ATP:GTP 3'‑pyrophosphotransferase |
| RA | 4,741,283 | C→G | intergenic (+474/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,285 | 2 bp→CT | intergenic (+476/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,978,615 | (C)8→9 | coding (30/696 nt) | flgH ← | flagellar L‑ring protein |
| MC JC | 6,098,326 | (CAAGCTGCG)2→1 | coding (811‑819/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 171382–176293 | 176293 | 1–4912 | 15 [12] | [13] 14 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947 | 176648–181708 | 181708 | 1–5061 | 14 [13] | [13] 15 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947 | 4808205 | 4808246 | 42 | 31 [0] | [11] 14 | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 337784 = | 35 (0.700) | 9 (0.230) | 11/210 | 2.7 | 33.6% | intergenic (‑31/+98) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease |
| ? | NC_002947 | 337868 = | 8 (0.200) | intergenic (‑115/+14) | PP_0279/PP_0280 | hypothetical protein/amino acid ABC transporter permease | |||||
| * | ? | NC_002947 | = 652785 | 36 (0.720) | 24 (0.570) | 20/226 | 1.4 | 61.1% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4808204 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | NC_002947 | 1844176 = | 2 (0.040) | 43 (0.890) | 36/256 | 0.4 | 65.2% | coding (660/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 2179419 | 44 (0.910) | intergenic (+175/+93) | PP_1931/PP_5486 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 1844179 | 2 (0.040) | 40 (0.830) | 37/258 | 0.4 | 64.5% | coding (657/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | 2177745 = | 42 (0.870) | intergenic (+103/‑63) | PP_5485/PP_1931 | GNAT family acetyltransferase/hypothetical protein | |||||
| * | ? | NC_002947 | = 2050638 | 26 (0.520) | 10 (0.280) | 9/192 | 2.9 | 34.0% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050674 | 20 (0.550) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
| * | ? | NC_002947 | = 4647641 | 21 (0.420) | 12 (0.340) | 10/188 | 2.6 | 46.3% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 13 (0.370) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
| * | ? | NC_002947 | 5652989 = | 79 (1.580) | 19 (0.450) | 14/224 | 2.3 | 23.7% | intergenic (‑39/+122) | PP_4961/PP_4962 | lipoprotein/hypothetical protein |
| ? | NC_002947 | 5653045 = | 56 (1.330) | intergenic (‑95/+66) | PP_4961/PP_4962 | lipoprotein/hypothetical protein | |||||