mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,749,357 | 0 | T | A | 73.0% | 332.1 / 139.3 | 192 | E68V (GAA→GTA) | ydhT | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| * | NC_000913 | 3,946,246 | 0 | G | A | 34.1% | 237.5 / 173.3 | 213 | noncoding (2543/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.2% | 537.7 / 246.0 | 348 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,100,789 | 0 | G | T | 21.3% | 380.5 / 103.7 | 204 | intergenic (+2/+62) | ycdZ/csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| * | NC_000913 | 1,100,791 | 0 | G | C | 21.1% | 404.5 / 118.5 | 204 | intergenic (+4/+60) | ycdZ/csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 21.1% | 259.8 / 20.7 | 136 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,100,793 | 0 | A | C | 20.6% | 398.8 / 120.9 | 214 | intergenic (+6/+58) | ycdZ/csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| * | NC_000913 | 2,755,880 | 0 | G | A | 20.5% | 1088.5 / 256.6 | 510 | intergenic (+502/‑279) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| Marginal new junction evidence (lowest skew 10 of 777 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 84 (0.460) | 26/182 | 6.2 | 77.7% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037457 | 26 (0.130) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 225281 | NA (NA) | 106 (0.570) | 25/186 | 6.5 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 4037450 | NA (NA) | 84 (0.460) | 24/182 | 6.6 | 24.2% | intergenic (+115/‑69) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4168568 | 284 (1.450) | intergenic (+121/‑73) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 3648127 | 284 (1.450) | 42 (0.240) | 22/174 | 6.8 | 13.9% | noncoding (65/84 nt) | agrA | inactive antisense sRNA |
| ? | NC_000913 | = 3648363 | 268 (1.540) | noncoding (70/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913 | 225154 = | NA (NA) | 52 (0.280) | 23/186 | 7.0 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 107 (0.580) | 22/184 | 7.1 | 62.0% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038811 | 70 (0.360) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 107 (0.580) | 22/184 | 7.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3943624 | NA (NA) | 77 (0.420) | 21/182 | 7.3 | 100% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943642 | 0 (0.000) | intergenic (+132/‑62) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 163 (0.880) | 21/184 | 7.3 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 225895 | NA (NA) | 136 (0.750) | 21/182 | 7.3 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225899 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||