breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_pae_pgi4,295,3200CT24.3% 227.4 / 82.2 148intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 85 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 1207790 =53 (0.660)19 (0.270) 19/248 4.3 23.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_pgi 1209619 = 77 (1.090)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913_3_pae_pgi = 120780546 (0.580)17 (0.240) 16/248 5.2 22.9% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_pgi = 1209602 74 (1.050)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913_3_pae_pgi 1097456 =28 (0.350)8 (0.110) 8/264 8.6 25.7% intergenic (+627/+109) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097476 = 20 (0.270)intergenic (+647/+89) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913_3_pae_pgi 1097275 =29 (0.360)8 (0.110) 8/264 8.6 25.3% intergenic (+446/+290) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097476 = 20 (0.270)intergenic (+647/+89) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913_3_pae_pgi 4284603 =NA (NA)6 (0.080) 6/266 9.7 6.0% noncoding (42/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_pae_pgi 4284635 = 94 (1.240)noncoding (74/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913_3_pae_pgi 2945986 =84 (1.050)6 (0.080) 6/266 9.7 6.2% noncoding (91/97 nt) RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_pae_pgi = 4080042 101 (1.330)noncoding (23/98 nt) REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913_3_pae_pgi 1097287 =34 (0.430)6 (0.080) 6/264 9.7 19.3% intergenic (+458/+278) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097464 = 18 (0.240)intergenic (+635/+101) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913_3_pae_pgi 1097275 =29 (0.360)6 (0.080) 6/264 9.7 17.6% intergenic (+446/+290) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097295 = 29 (0.380)intergenic (+466/+270) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913_3_pae_pgi 1097094 =57 (0.710)6 (0.080) 6/264 9.7 14.0% intergenic (+265/+471) ycdU/serX putative inner membrane protein/tRNA‑Ser
?NC_000913_3_pae_pgi 1097476 = 20 (0.270)intergenic (+647/+89) ycdU/serX putative inner membrane protein/tRNA‑Ser
* ? NC_000913_3_pae_pgi = 170214570 (0.880)5 (0.070) 5/258 10.1 6.9% intergenic (+16/‑88) malY/add PLP‑dependent beta‑cystathionase and maltose regulon regulator/adenosine deaminase
?NC_000913_3_pae_pgi = 1702153 70 (0.950)intergenic (+24/‑80) malY/add PLP‑dependent beta‑cystathionase and maltose regulon regulator/adenosine deaminase